Strain Fitness in Pseudomonas simiae WCS417 around PS417_19795
Experiment: Chloramphenicol 0.015 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Chloramphenicol 0.015 mg/ml |
|---|---|---|---|---|---|
| remove | |||||
| 4,296,729 | - | PS417_19790 | 0.30 | +1.2 | |
| 4,296,729 | - | +0.7 | |||
| 4,297,144 | - | PS417_19790 | 0.60 | +0.3 | |
| 4,297,144 | - | PS417_19790 | 0.60 | -0.4 | |
| 4,297,926 | + | PS417_19795 | 0.33 | +1.0 | |
| 4,297,926 | + | PS417_19795 | 0.33 | +1.1 | |
| 4,297,927 | - | PS417_19795 | 0.33 | +0.7 | |
| 4,297,927 | - | PS417_19795 | 0.33 | +0.9 | |
| 4,297,934 | + | PS417_19795 | 0.34 | +0.7 | |
| 4,297,934 | + | PS417_19795 | 0.34 | +0.8 | |
| 4,297,935 | - | PS417_19795 | 0.34 | +1.3 | |
| 4,297,935 | - | PS417_19795 | 0.34 | +0.5 | |
| 4,297,935 | - | PS417_19795 | 0.34 | +0.7 | |
| 4,298,227 | - | PS417_19795 | 0.72 | +0.8 | |
| 4,298,243 | - | PS417_19795 | 0.75 | +0.3 | |
| 4,298,449 | + | +1.7 | |||
| 4,298,449 | + | +0.9 | |||
| 4,298,449 | + | +1.3 | |||
| 4,298,449 | + | +0.2 | |||
| 4,298,449 | + | +0.2 | |||
| 4,298,450 | - | -0.5 | |||
| 4,298,450 | - | -1.3 | |||
| 4,299,220 | + | -0.3 | |||
| 4,299,221 | - | PS417_19800 | 0.76 | -0.1 | |
| 4,299,221 | - | PS417_19800 | 0.76 | +0.4 |
Or see this region's nucleotide sequence