Experiment: Chloramphenicol 0.015 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_18390 and PS417_18395 are separated by 3 nucleotides PS417_18395 and PS417_18400 overlap by 4 nucleotides PS417_18400 and PS417_18405 are separated by 57 nucleotides
PS417_18390: PS417_18390 - LacI family transcriptional regulator, at 4,003,113 to 4,004,135
_18390
PS417_18395: PS417_18395 - D-ribose ABC transporter, permease component RbsC (from data) , at 4,004,139 to 4,005,116
_18395
PS417_18400: PS417_18400 - D-ribose ABC transporter, ATPase component RbsA (from data) , at 4,005,113 to 4,006,666
_18400
PS417_18405: PS417_18405 - D-ribose ABC transporter, substrate-binding component RbsB (from data) , at 4,006,724 to 4,007,680
_18405
Position (kb)
4005
4006
4007 Strain fitness (log2 ratio)
-2
-1
0
1 at 4004.281 kb on - strand, within PS417_18395 at 4004.545 kb on - strand, within PS417_18395 at 4004.660 kb on - strand, within PS417_18395 at 4004.941 kb on - strand, within PS417_18395 at 4005.810 kb on + strand, within PS417_18400 at 4005.810 kb on + strand, within PS417_18400 at 4005.810 kb on + strand, within PS417_18400 at 4005.972 kb on + strand, within PS417_18400 at 4005.973 kb on - strand, within PS417_18400 at 4006.667 kb on - strand at 4007.249 kb on + strand, within PS417_18405
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.015 mg/ml remove 4,004,281 - PS417_18395 0.15 -2.0 4,004,545 - PS417_18395 0.42 -0.2 4,004,660 - PS417_18395 0.53 +0.2 4,004,941 - PS417_18395 0.82 -0.4 4,005,810 + PS417_18400 0.45 -0.4 4,005,810 + PS417_18400 0.45 +1.0 4,005,810 + PS417_18400 0.45 -0.3 4,005,972 + PS417_18400 0.55 +0.3 4,005,973 - PS417_18400 0.55 +1.3 4,006,667 - +0.1 4,007,249 + PS417_18405 0.55 +0.6
Or see this region's nucleotide sequence