Strain Fitness in Pseudomonas simiae WCS417 around PS417_01715

Experiment: Chloramphenicol 0.015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_01705 and PS417_01710 are separated by 108 nucleotidesPS417_01710 and PS417_01715 overlap by 4 nucleotidesPS417_01715 and PS417_01720 are separated by 405 nucleotides PS417_01705: PS417_01705 - Formiminoglutamic iminohydrolase (EC 3.5.3.13) (from data), at 377,544 to 378,908 _01705 PS417_01710: PS417_01710 - histidine utilization repressor, at 379,017 to 379,766 _01710 PS417_01715: PS417_01715 - hypothetical protein, at 379,763 to 380,323 _01715 PS417_01720: PS417_01720 - Urocanate hydratase (EC 4.2.1.49) (from data), at 380,729 to 382,399 _01720 Position (kb) 379 380 381Strain fitness (log2 ratio) -2 -1 0 1 2at 378.852 kb on + strandat 378.853 kb on - strandat 378.853 kb on - strandat 378.934 kb on + strandat 378.934 kb on + strandat 378.940 kb on + strandat 378.941 kb on - strandat 378.942 kb on + strandat 378.942 kb on + strandat 378.943 kb on - strandat 378.943 kb on - strandat 378.944 kb on + strandat 378.944 kb on + strandat 378.944 kb on + strandat 378.944 kb on + strandat 378.945 kb on - strandat 378.945 kb on - strandat 378.945 kb on - strandat 378.945 kb on - strandat 378.948 kb on + strandat 378.948 kb on + strandat 378.948 kb on + strandat 378.948 kb on + strandat 378.949 kb on - strandat 378.949 kb on - strandat 378.949 kb on - strandat 378.950 kb on + strandat 378.951 kb on - strandat 378.951 kb on - strandat 378.986 kb on + strandat 378.987 kb on - strandat 378.987 kb on - strandat 378.987 kb on - strandat 378.987 kb on - strandat 379.080 kb on + strandat 379.081 kb on - strandat 379.081 kb on - strandat 379.346 kb on + strand, within PS417_01710at 379.464 kb on - strand, within PS417_01710at 379.516 kb on - strand, within PS417_01710at 379.548 kb on + strand, within PS417_01710at 379.549 kb on - strand, within PS417_01710at 379.549 kb on - strand, within PS417_01710at 379.796 kb on + strandat 379.797 kb on - strandat 379.800 kb on + strandat 379.801 kb on - strandat 379.937 kb on + strand, within PS417_01715at 380.255 kb on - strand, within PS417_01715at 380.372 kb on - strandat 380.372 kb on - strandat 380.550 kb on + strandat 380.567 kb on - strandat 380.648 kb on + strandat 380.659 kb on - strandat 380.659 kb on - strandat 380.740 kb on + strandat 380.741 kb on - strandat 380.883 kb on - strandat 381.113 kb on + strand, within PS417_01720at 381.113 kb on + strand, within PS417_01720at 381.113 kb on + strand, within PS417_01720at 381.114 kb on - strand, within PS417_01720at 381.114 kb on - strand, within PS417_01720at 381.114 kb on - strand, within PS417_01720at 381.114 kb on - strand, within PS417_01720at 381.114 kb on - strand, within PS417_01720at 381.143 kb on + strand, within PS417_01720at 381.144 kb on - strand, within PS417_01720at 381.176 kb on + strand, within PS417_01720at 381.177 kb on - strandat 381.209 kb on + strand, within PS417_01720at 381.209 kb on + strand, within PS417_01720at 381.210 kb on - strand, within PS417_01720

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.015 mg/ml
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378,852 + +1.6
378,853 - -0.1
378,853 - -0.1
378,934 + -0.1
378,934 + -0.4
378,940 + +0.4
378,941 - -0.1
378,942 + -0.0
378,942 + +0.2
378,943 - +0.6
378,943 - -0.7
378,944 + +0.0
378,944 + +2.3
378,944 + -0.3
378,944 + -1.1
378,945 - -0.1
378,945 - +0.6
378,945 - +0.3
378,945 - +0.2
378,948 + +0.3
378,948 + +0.0
378,948 + +0.2
378,948 + -2.3
378,949 - -0.6
378,949 - +0.0
378,949 - +0.4
378,950 + -1.6
378,951 - +0.4
378,951 - +0.1
378,986 + +0.3
378,987 - -0.7
378,987 - +0.0
378,987 - +2.3
378,987 - -0.4
379,080 + +0.5
379,081 - -0.2
379,081 - +0.5
379,346 + PS417_01710 0.44 +0.1
379,464 - PS417_01710 0.60 +0.4
379,516 - PS417_01710 0.67 +0.7
379,548 + PS417_01710 0.71 +0.9
379,549 - PS417_01710 0.71 +0.2
379,549 - PS417_01710 0.71 -0.2
379,796 + -0.4
379,797 - -0.1
379,800 + +0.1
379,801 - -0.1
379,937 + PS417_01715 0.31 -0.6
380,255 - PS417_01715 0.88 -0.3
380,372 - -1.3
380,372 - -1.9
380,550 + +1.3
380,567 - -0.6
380,648 + -0.1
380,659 - +1.5
380,659 - -0.6
380,740 + -0.0
380,741 - -1.3
380,883 - -0.3
381,113 + PS417_01720 0.23 -0.6
381,113 + PS417_01720 0.23 -0.1
381,113 + PS417_01720 0.23 -1.6
381,114 - PS417_01720 0.23 +0.1
381,114 - PS417_01720 0.23 -0.2
381,114 - PS417_01720 0.23 +0.4
381,114 - PS417_01720 0.23 -0.1
381,114 - PS417_01720 0.23 +0.8
381,143 + PS417_01720 0.25 -0.1
381,144 - PS417_01720 0.25 -0.5
381,176 + PS417_01720 0.27 -1.1
381,177 - +0.3
381,209 + PS417_01720 0.29 -0.2
381,209 + PS417_01720 0.29 -0.1
381,210 - PS417_01720 0.29 +1.7

Or see this region's nucleotide sequence