Experiment: Chloramphenicol 0.015 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_16080 and PS417_16085 overlap by 14 nucleotides PS417_16085 and PS417_16090 are separated by 199 nucleotides PS417_16090 and PS417_16095 are separated by 29 nucleotides
PS417_16080: PS417_16080 - AraC family transcriptional regulator, at 3,525,376 to 3,526,413
_16080
PS417_16085: PS417_16085 - LysR family transcriptional regulator, at 3,526,400 to 3,527,281
_16085
PS417_16090: PS417_16090 - hypothetical protein, at 3,527,481 to 3,528,098
_16090
PS417_16095: PS417_16095 - amidohydrolase, at 3,528,128 to 3,529,966
_16095
Position (kb)
3526
3527
3528 Strain fitness (log2 ratio)
-1
0
1
2 at 3525.643 kb on + strand, within PS417_16080 at 3525.779 kb on - strand, within PS417_16080 at 3525.932 kb on - strand, within PS417_16080 at 3526.579 kb on - strand, within PS417_16085 at 3526.771 kb on - strand, within PS417_16085 at 3527.085 kb on + strand, within PS417_16085 at 3527.085 kb on + strand, within PS417_16085 at 3527.085 kb on + strand, within PS417_16085 at 3527.085 kb on + strand, within PS417_16085 at 3527.086 kb on - strand, within PS417_16085 at 3527.089 kb on - strand, within PS417_16085 at 3527.459 kb on + strand at 3527.463 kb on + strand at 3527.478 kb on + strand at 3527.479 kb on - strand at 3527.524 kb on + strand at 3528.021 kb on + strand at 3528.022 kb on - strand, within PS417_16090 at 3528.121 kb on - strand at 3528.121 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.015 mg/ml remove 3,525,643 + PS417_16080 0.26 +2.0 3,525,779 - PS417_16080 0.39 -0.4 3,525,932 - PS417_16080 0.54 +0.4 3,526,579 - PS417_16085 0.20 +0.6 3,526,771 - PS417_16085 0.42 +0.5 3,527,085 + PS417_16085 0.78 +0.6 3,527,085 + PS417_16085 0.78 +0.8 3,527,085 + PS417_16085 0.78 +0.5 3,527,085 + PS417_16085 0.78 +0.5 3,527,086 - PS417_16085 0.78 +0.2 3,527,089 - PS417_16085 0.78 -0.5 3,527,459 + -0.1 3,527,463 + -1.6 3,527,478 + +0.0 3,527,479 - +0.2 3,527,524 + +0.6 3,528,021 + -0.1 3,528,022 - PS417_16090 0.88 -1.1 3,528,121 - +0.4 3,528,121 - -0.2
Or see this region's nucleotide sequence