Strain Fitness in Pseudomonas simiae WCS417 around PS417_01600
Experiment: Chloramphenicol 0.015 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Chloramphenicol 0.015 mg/ml |
---|---|---|---|---|---|
remove | |||||
352,184 | - | -0.1 | |||
352,188 | + | -1.8 | |||
352,189 | - | +1.3 | |||
352,189 | - | -0.2 | |||
352,189 | - | +0.5 | |||
352,189 | - | +1.0 | |||
352,189 | - | -0.5 | |||
352,255 | + | -0.9 | |||
352,325 | + | -1.4 | |||
352,381 | - | PS417_01600 | 0.14 | +0.6 | |
353,067 | + | PS417_01600 | 0.67 | -1.5 | |
353,068 | - | PS417_01600 | 0.67 | -0.3 | |
353,074 | - | PS417_01600 | 0.68 | -0.1 | |
353,076 | + | PS417_01600 | 0.68 | -1.8 | |
353,077 | - | PS417_01600 | 0.68 | -0.7 | |
353,077 | - | PS417_01600 | 0.68 | -1.9 | |
353,077 | - | PS417_01600 | 0.68 | -1.0 | |
353,401 | + | -0.9 | |||
353,494 | + | -0.4 | |||
353,527 | + | -0.0 | |||
353,528 | - | +0.3 | |||
353,528 | - | -0.2 | |||
353,528 | - | -0.3 | |||
353,528 | - | -0.6 | |||
353,531 | - | -0.2 | |||
353,531 | - | +0.8 | |||
353,531 | - | -0.1 | |||
353,531 | - | +0.2 | |||
353,583 | + | -0.2 | |||
353,584 | - | +0.3 | |||
353,584 | - | +1.9 | |||
353,584 | - | -0.7 | |||
353,604 | - | +0.5 | |||
353,620 | + | -0.5 | |||
353,621 | - | -0.3 | |||
353,621 | - | +1.3 | |||
353,621 | - | -0.1 | |||
353,632 | + | -0.3 | |||
353,633 | - | +0.2 | |||
353,705 | + | -0.6 | |||
353,706 | - | +0.4 | |||
354,097 | + | PS417_01605 | 0.22 | +0.3 | |
354,098 | - | PS417_01605 | 0.23 | +0.4 |
Or see this region's nucleotide sequence