Strain Fitness in Pseudomonas simiae WCS417 around PS417_01420

Experiment: Chloramphenicol 0.015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_01415 and PS417_01420 are separated by 0 nucleotidesPS417_01420 and PS417_01425 are separated by 451 nucleotides PS417_01415: PS417_01415 - glycosyl transferase family 1, at 312,662 to 314,176 _01415 PS417_01420: PS417_01420 - histidine kinase, at 314,177 to 315,547 _01420 PS417_01425: PS417_01425 - AraC family transcriptional regulator, at 315,999 to 316,868 _01425 Position (kb) 314 315 316Strain fitness (log2 ratio) -2 -1 0 1 2at 313.277 kb on + strand, within PS417_01415at 313.278 kb on - strand, within PS417_01415at 313.278 kb on - strand, within PS417_01415at 313.297 kb on + strand, within PS417_01415at 313.298 kb on - strand, within PS417_01415at 313.298 kb on - strand, within PS417_01415at 313.301 kb on + strand, within PS417_01415at 313.397 kb on + strand, within PS417_01415at 313.421 kb on + strand, within PS417_01415at 313.422 kb on - strand, within PS417_01415at 313.448 kb on + strand, within PS417_01415at 313.449 kb on - strand, within PS417_01415at 313.478 kb on + strand, within PS417_01415at 313.478 kb on + strand, within PS417_01415at 313.478 kb on + strand, within PS417_01415at 314.111 kb on + strandat 314.112 kb on - strandat 314.112 kb on - strandat 314.112 kb on - strandat 314.112 kb on - strandat 314.225 kb on + strandat 314.226 kb on - strandat 314.246 kb on + strandat 314.247 kb on - strandat 314.247 kb on - strandat 314.247 kb on - strandat 314.247 kb on - strandat 314.247 kb on - strandat 314.247 kb on - strandat 314.252 kb on + strandat 314.252 kb on + strandat 314.252 kb on + strandat 314.253 kb on - strandat 314.378 kb on + strand, within PS417_01420at 314.379 kb on - strand, within PS417_01420at 314.465 kb on + strand, within PS417_01420at 314.466 kb on - strand, within PS417_01420at 314.687 kb on + strand, within PS417_01420at 314.711 kb on + strand, within PS417_01420at 314.786 kb on + strand, within PS417_01420at 314.786 kb on + strand, within PS417_01420at 314.787 kb on - strand, within PS417_01420at 314.787 kb on - strand, within PS417_01420at 314.787 kb on - strand, within PS417_01420at 314.859 kb on + strand, within PS417_01420at 314.859 kb on + strand, within PS417_01420at 314.859 kb on + strand, within PS417_01420at 314.860 kb on - strand, within PS417_01420at 314.892 kb on - strand, within PS417_01420at 315.257 kb on + strand, within PS417_01420at 315.258 kb on - strand, within PS417_01420at 315.260 kb on + strand, within PS417_01420at 315.260 kb on + strand, within PS417_01420at 315.260 kb on + strand, within PS417_01420at 315.260 kb on + strand, within PS417_01420at 315.261 kb on - strand, within PS417_01420at 315.275 kb on + strand, within PS417_01420at 315.276 kb on - strand, within PS417_01420at 315.339 kb on - strand, within PS417_01420at 315.358 kb on - strand, within PS417_01420at 315.430 kb on + strandat 315.430 kb on + strandat 315.474 kb on + strandat 315.521 kb on + strandat 315.522 kb on - strandat 315.532 kb on + strandat 315.532 kb on + strandat 315.533 kb on - strandat 315.533 kb on - strandat 315.533 kb on - strandat 315.533 kb on - strandat 315.533 kb on - strandat 315.533 kb on - strandat 315.639 kb on - strandat 315.639 kb on - strandat 315.641 kb on + strandat 315.695 kb on + strandat 315.749 kb on + strandat 315.749 kb on + strandat 315.749 kb on + strandat 315.965 kb on + strandat 315.965 kb on + strandat 315.965 kb on + strandat 315.978 kb on - strandat 316.026 kb on + strandat 316.056 kb on + strandat 316.056 kb on + strandat 316.156 kb on + strand, within PS417_01425at 316.177 kb on - strand, within PS417_01425at 316.177 kb on - strand, within PS417_01425at 316.196 kb on - strand, within PS417_01425at 316.362 kb on - strand, within PS417_01425at 316.362 kb on - strand, within PS417_01425at 316.395 kb on - strand, within PS417_01425

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.015 mg/ml
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313,277 + PS417_01415 0.41 -0.1
313,278 - PS417_01415 0.41 -1.5
313,278 - PS417_01415 0.41 -1.3
313,297 + PS417_01415 0.42 +1.3
313,298 - PS417_01415 0.42 +0.7
313,298 - PS417_01415 0.42 +0.2
313,301 + PS417_01415 0.42 +0.2
313,397 + PS417_01415 0.49 +0.3
313,421 + PS417_01415 0.50 +0.7
313,422 - PS417_01415 0.50 +2.3
313,448 + PS417_01415 0.52 +0.8
313,449 - PS417_01415 0.52 +1.3
313,478 + PS417_01415 0.54 +0.5
313,478 + PS417_01415 0.54 +0.1
313,478 + PS417_01415 0.54 +1.1
314,111 + +0.6
314,112 - +0.4
314,112 - +2.5
314,112 - +1.1
314,112 - +0.4
314,225 + +0.4
314,226 - +1.5
314,246 + +1.7
314,247 - +0.5
314,247 - +1.0
314,247 - +0.6
314,247 - +0.8
314,247 - +0.7
314,247 - +0.7
314,252 + +0.8
314,252 + +0.8
314,252 + +0.4
314,253 - +0.9
314,378 + PS417_01420 0.15 +1.1
314,379 - PS417_01420 0.15 +0.3
314,465 + PS417_01420 0.21 +0.9
314,466 - PS417_01420 0.21 +0.0
314,687 + PS417_01420 0.37 -0.1
314,711 + PS417_01420 0.39 +0.2
314,786 + PS417_01420 0.44 +0.2
314,786 + PS417_01420 0.44 +0.3
314,787 - PS417_01420 0.44 +1.1
314,787 - PS417_01420 0.44 +0.4
314,787 - PS417_01420 0.44 +0.5
314,859 + PS417_01420 0.50 -0.3
314,859 + PS417_01420 0.50 -0.1
314,859 + PS417_01420 0.50 +1.4
314,860 - PS417_01420 0.50 +0.4
314,892 - PS417_01420 0.52 +0.1
315,257 + PS417_01420 0.79 +0.8
315,258 - PS417_01420 0.79 +0.7
315,260 + PS417_01420 0.79 +0.5
315,260 + PS417_01420 0.79 +0.5
315,260 + PS417_01420 0.79 +0.8
315,260 + PS417_01420 0.79 +0.5
315,261 - PS417_01420 0.79 +1.2
315,275 + PS417_01420 0.80 +0.3
315,276 - PS417_01420 0.80 +0.6
315,339 - PS417_01420 0.85 -0.4
315,358 - PS417_01420 0.86 +1.0
315,430 + +0.8
315,430 + +0.6
315,474 + +1.3
315,521 + -0.6
315,522 - +0.6
315,532 + +0.3
315,532 + +0.4
315,533 - +0.4
315,533 - +0.8
315,533 - +0.9
315,533 - -0.4
315,533 - +1.0
315,533 - +1.1
315,639 - +0.3
315,639 - +0.2
315,641 + +0.1
315,695 + -1.8
315,749 + -0.1
315,749 + -0.5
315,749 + +0.3
315,965 + -0.6
315,965 + -0.5
315,965 + -0.2
315,978 - +0.3
316,026 + +0.4
316,056 + +0.1
316,056 + +0.5
316,156 + PS417_01425 0.18 +0.4
316,177 - PS417_01425 0.20 +0.3
316,177 - PS417_01425 0.20 +0.1
316,196 - PS417_01425 0.23 +0.3
316,362 - PS417_01425 0.42 -0.0
316,362 - PS417_01425 0.42 -0.7
316,395 - PS417_01425 0.46 +0.8

Or see this region's nucleotide sequence