Experiment: Chloramphenicol 0.015 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_14175 and PS417_14180 overlap by 4 nucleotides PS417_14180 and PS417_14185 are separated by 50 nucleotides
PS417_14175: PS417_14175 - ArsC family transcriptional regulator, at 3,106,704 to 3,107,189
_14175
PS417_14180: PS417_14180 - NADPH-dependent FMN reductase, at 3,107,186 to 3,107,872
_14180
PS417_14185: PS417_14185 - transcriptional regulator, at 3,107,923 to 3,108,714
_14185
Position (kb)
3107
3108
3109 Strain fitness (log2 ratio)
-2
-1
0
1 at 3106.940 kb on - strand, within PS417_14175 at 3106.940 kb on - strand, within PS417_14175 at 3106.940 kb on - strand, within PS417_14175 at 3107.270 kb on + strand, within PS417_14180 at 3107.888 kb on + strand at 3107.889 kb on - strand at 3108.104 kb on - strand, within PS417_14185 at 3108.619 kb on - strand at 3108.619 kb on - strand, within PS417_14185 at 3108.619 kb on - strand at 3108.619 kb on - strand, within PS417_14185 at 3108.670 kb on + strand at 3108.678 kb on + strand at 3108.818 kb on - strand at 3108.818 kb on - strand at 3109.026 kb on + strand at 3109.026 kb on + strand at 3109.027 kb on - strand at 3109.342 kb on - strand at 3109.361 kb on - strand at 3109.368 kb on + strand at 3109.368 kb on + strand at 3109.394 kb on + strand at 3109.395 kb on - strand at 3109.396 kb on + strand at 3109.398 kb on + strand at 3109.398 kb on + strand at 3109.398 kb on + strand at 3109.399 kb on - strand at 3109.399 kb on - strand at 3109.399 kb on - strand at 3109.403 kb on + strand at 3109.404 kb on - strand at 3109.405 kb on + strand at 3109.405 kb on + strand at 3109.405 kb on + strand at 3109.406 kb on - strand at 3109.467 kb on + strand at 3109.501 kb on - strand at 3109.565 kb on - strand at 3109.565 kb on - strand at 3109.620 kb on - strand at 3109.677 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.015 mg/ml remove 3,106,940 - PS417_14175 0.49 +0.9 3,106,940 - PS417_14175 0.49 -1.0 3,106,940 - PS417_14175 0.49 -0.1 3,107,270 + PS417_14180 0.12 +0.4 3,107,888 + -1.2 3,107,889 - -0.2 3,108,104 - PS417_14185 0.23 +0.5 3,108,619 - -0.6 3,108,619 - PS417_14185 0.88 +0.4 3,108,619 - +1.0 3,108,619 - PS417_14185 0.88 +0.6 3,108,670 + -0.8 3,108,678 + -0.7 3,108,818 - -0.1 3,108,818 - +1.4 3,109,026 + +0.1 3,109,026 + +0.8 3,109,027 - +0.4 3,109,342 - -0.4 3,109,361 - -0.1 3,109,368 + +0.1 3,109,368 + -0.1 3,109,394 + +1.4 3,109,395 - +0.0 3,109,396 + +0.4 3,109,398 + +0.4 3,109,398 + -1.8 3,109,398 + -1.6 3,109,399 - -0.0 3,109,399 - -0.7 3,109,399 - +1.5 3,109,403 + -0.2 3,109,404 - +0.2 3,109,405 + +1.1 3,109,405 + -0.4 3,109,405 + +0.6 3,109,406 - +1.0 3,109,467 + +0.6 3,109,501 - +0.4 3,109,565 - +1.3 3,109,565 - -0.0 3,109,620 - +0.4 3,109,677 + +0.6
Or see this region's nucleotide sequence