Strain Fitness in Pseudomonas simiae WCS417 around PS417_14185

Experiment: Chloramphenicol 0.015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_14175 and PS417_14180 overlap by 4 nucleotidesPS417_14180 and PS417_14185 are separated by 50 nucleotides PS417_14175: PS417_14175 - ArsC family transcriptional regulator, at 3,106,704 to 3,107,189 _14175 PS417_14180: PS417_14180 - NADPH-dependent FMN reductase, at 3,107,186 to 3,107,872 _14180 PS417_14185: PS417_14185 - transcriptional regulator, at 3,107,923 to 3,108,714 _14185 Position (kb) 3107 3108 3109Strain fitness (log2 ratio) -2 -1 0 1at 3106.940 kb on - strand, within PS417_14175at 3106.940 kb on - strand, within PS417_14175at 3106.940 kb on - strand, within PS417_14175at 3107.270 kb on + strand, within PS417_14180at 3107.888 kb on + strandat 3107.889 kb on - strandat 3108.104 kb on - strand, within PS417_14185at 3108.619 kb on - strandat 3108.619 kb on - strand, within PS417_14185at 3108.619 kb on - strandat 3108.619 kb on - strand, within PS417_14185at 3108.670 kb on + strandat 3108.678 kb on + strandat 3108.818 kb on - strandat 3108.818 kb on - strandat 3109.026 kb on + strandat 3109.026 kb on + strandat 3109.027 kb on - strandat 3109.342 kb on - strandat 3109.361 kb on - strandat 3109.368 kb on + strandat 3109.368 kb on + strandat 3109.394 kb on + strandat 3109.395 kb on - strandat 3109.396 kb on + strandat 3109.398 kb on + strandat 3109.398 kb on + strandat 3109.398 kb on + strandat 3109.399 kb on - strandat 3109.399 kb on - strandat 3109.399 kb on - strandat 3109.403 kb on + strandat 3109.404 kb on - strandat 3109.405 kb on + strandat 3109.405 kb on + strandat 3109.405 kb on + strandat 3109.406 kb on - strandat 3109.467 kb on + strandat 3109.501 kb on - strandat 3109.565 kb on - strandat 3109.565 kb on - strandat 3109.620 kb on - strandat 3109.677 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.015 mg/ml
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3,106,940 - PS417_14175 0.49 +0.9
3,106,940 - PS417_14175 0.49 -1.0
3,106,940 - PS417_14175 0.49 -0.1
3,107,270 + PS417_14180 0.12 +0.4
3,107,888 + -1.2
3,107,889 - -0.2
3,108,104 - PS417_14185 0.23 +0.5
3,108,619 - -0.6
3,108,619 - PS417_14185 0.88 +0.4
3,108,619 - +1.0
3,108,619 - PS417_14185 0.88 +0.6
3,108,670 + -0.8
3,108,678 + -0.7
3,108,818 - -0.1
3,108,818 - +1.4
3,109,026 + +0.1
3,109,026 + +0.8
3,109,027 - +0.4
3,109,342 - -0.4
3,109,361 - -0.1
3,109,368 + +0.1
3,109,368 + -0.1
3,109,394 + +1.4
3,109,395 - +0.0
3,109,396 + +0.4
3,109,398 + +0.4
3,109,398 + -1.8
3,109,398 + -1.6
3,109,399 - -0.0
3,109,399 - -0.7
3,109,399 - +1.5
3,109,403 + -0.2
3,109,404 - +0.2
3,109,405 + +1.1
3,109,405 + -0.4
3,109,405 + +0.6
3,109,406 - +1.0
3,109,467 + +0.6
3,109,501 - +0.4
3,109,565 - +1.3
3,109,565 - -0.0
3,109,620 - +0.4
3,109,677 + +0.6

Or see this region's nucleotide sequence