Experiment: Chloramphenicol 0.015 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01395 and PS417_01400 are separated by 26 nucleotides PS417_01400 and PS417_01405 are separated by 5 nucleotides
PS417_01395: PS417_01395 - biofilm formation protein PelB, at 306,182 to 309,781
_01395
PS417_01400: PS417_01400 - hypothetical protein, at 309,808 to 310,326
_01400
PS417_01405: PS417_01405 - sugar transporter, at 310,332 to 311,699
_01405
Position (kb)
309
310
311 Strain fitness (log2 ratio)
-1
0
1 at 308.884 kb on + strand, within PS417_01395 at 308.921 kb on + strand, within PS417_01395 at 308.921 kb on + strand, within PS417_01395 at 308.922 kb on - strand, within PS417_01395 at 308.923 kb on + strand, within PS417_01395 at 308.924 kb on - strand, within PS417_01395 at 309.356 kb on + strand, within PS417_01395 at 309.357 kb on - strand, within PS417_01395 at 309.392 kb on + strand, within PS417_01395 at 309.393 kb on - strand at 309.393 kb on - strand, within PS417_01395 at 309.393 kb on - strand, within PS417_01395 at 309.519 kb on - strand at 309.519 kb on - strand at 309.578 kb on + strand at 309.579 kb on - strand at 309.635 kb on + strand at 309.635 kb on + strand at 309.636 kb on - strand at 309.636 kb on - strand at 309.758 kb on + strand at 309.793 kb on - strand at 309.845 kb on + strand at 309.846 kb on - strand at 309.938 kb on - strand, within PS417_01400 at 310.148 kb on - strand, within PS417_01400 at 310.403 kb on - strand at 310.599 kb on + strand, within PS417_01405 at 310.602 kb on - strand at 310.714 kb on - strand, within PS417_01405
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.015 mg/ml remove 308,884 + PS417_01395 0.75 +0.4 308,921 + PS417_01395 0.76 +1.1 308,921 + PS417_01395 0.76 -0.3 308,922 - PS417_01395 0.76 +0.5 308,923 + PS417_01395 0.76 +0.9 308,924 - PS417_01395 0.76 +1.0 309,356 + PS417_01395 0.88 +0.7 309,357 - PS417_01395 0.88 -1.3 309,392 + PS417_01395 0.89 +0.3 309,393 - +0.3 309,393 - PS417_01395 0.89 +0.0 309,393 - PS417_01395 0.89 +0.7 309,519 - +0.4 309,519 - +0.6 309,578 + +0.8 309,579 - +0.5 309,635 + +0.5 309,635 + +0.9 309,636 - +0.9 309,636 - +0.2 309,758 + +0.7 309,793 - +1.0 309,845 + +0.6 309,846 - -0.0 309,938 - PS417_01400 0.25 +0.1 310,148 - PS417_01400 0.66 +1.1 310,403 - +0.3 310,599 + PS417_01405 0.20 +0.3 310,602 - -0.0 310,714 - PS417_01405 0.28 +1.1
Or see this region's nucleotide sequence