Experiment: Chloramphenicol 0.015 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_13635 and PS417_13640 overlap by 8 nucleotides PS417_13640 and PS417_13645 are separated by 30 nucleotides PS417_13645 and PS417_13650 are separated by 22 nucleotides
PS417_13635: PS417_13635 - D-ribose transporter ATP-binding protein, at 3,000,302 to 3,001,834
_13635
PS417_13640: PS417_13640 - ribose ABC transporter permease, at 3,001,827 to 3,002,804
_13640
PS417_13645: PS417_13645 - ABC transporter, at 3,002,835 to 3,003,767
_13645
PS417_13650: PS417_13650 - LacI family transcriptional regulator, at 3,003,790 to 3,004,791
_13650
Position (kb)
3001
3002
3003 Strain fitness (log2 ratio)
-2
-1
0
1 at 3000.894 kb on - strand, within PS417_13635 at 3000.894 kb on - strand, within PS417_13635 at 3000.963 kb on - strand, within PS417_13635 at 3001.043 kb on + strand, within PS417_13635 at 3001.043 kb on + strand, within PS417_13635 at 3001.065 kb on - strand, within PS417_13635 at 3001.067 kb on - strand, within PS417_13635 at 3001.771 kb on + strand at 3002.418 kb on + strand, within PS417_13640 at 3002.545 kb on + strand, within PS417_13640 at 3002.730 kb on + strand at 3003.034 kb on - strand, within PS417_13645 at 3003.065 kb on + strand, within PS417_13645 at 3003.249 kb on + strand, within PS417_13645 at 3003.598 kb on + strand, within PS417_13645 at 3003.738 kb on - strand at 3003.742 kb on - strand at 3003.742 kb on - strand at 3003.742 kb on - strand at 3003.742 kb on - strand at 3003.759 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.015 mg/ml remove 3,000,894 - PS417_13635 0.39 -0.6 3,000,894 - PS417_13635 0.39 +0.4 3,000,963 - PS417_13635 0.43 +0.1 3,001,043 + PS417_13635 0.48 -0.1 3,001,043 + PS417_13635 0.48 +0.3 3,001,065 - PS417_13635 0.50 +0.5 3,001,067 - PS417_13635 0.50 +0.4 3,001,771 + +0.2 3,002,418 + PS417_13640 0.60 -0.1 3,002,545 + PS417_13640 0.73 +1.6 3,002,730 + -0.1 3,003,034 - PS417_13645 0.21 -0.0 3,003,065 + PS417_13645 0.25 +0.9 3,003,249 + PS417_13645 0.44 -0.1 3,003,598 + PS417_13645 0.82 -1.8 3,003,738 - +0.1 3,003,742 - +0.1 3,003,742 - -0.4 3,003,742 - -0.8 3,003,742 - -0.6 3,003,759 - -0.9
Or see this region's nucleotide sequence