Strain Fitness in Pseudomonas simiae WCS417 around PS417_13195
Experiment: Chloramphenicol 0.015 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Chloramphenicol 0.015 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,884,529 | + | PS417_13190 | 0.76 | -0.2 | |
2,884,813 | + | PS417_13190 | 0.85 | -0.6 | |
2,884,825 | + | PS417_13190 | 0.85 | -0.1 | |
2,884,826 | - | PS417_13190 | 0.85 | -0.4 | |
2,884,826 | - | PS417_13190 | 0.85 | -0.6 | |
2,884,904 | + | PS417_13190 | 0.88 | -0.9 | |
2,885,053 | + | -2.2 | |||
2,885,053 | + | +0.1 | |||
2,885,053 | + | -0.4 | |||
2,885,053 | + | -1.9 | |||
2,885,053 | + | -0.8 | |||
2,885,053 | + | -0.8 | |||
2,885,053 | + | +0.3 | |||
2,885,053 | + | +0.3 | |||
2,885,053 | + | -0.5 | |||
2,885,053 | + | -0.8 | |||
2,885,054 | - | -0.6 | |||
2,885,180 | - | +0.3 | |||
2,885,656 | + | PS417_13195 | 0.28 | -0.3 | |
2,885,656 | + | -0.6 | |||
2,885,657 | - | PS417_13195 | 0.28 | -0.8 | |
2,885,912 | - | -0.6 | |||
2,885,917 | + | PS417_13195 | 0.49 | -0.2 | |
2,886,354 | + | PS417_13195 | 0.85 | -1.8 | |
2,886,565 | - | +0.0 | |||
2,886,599 | + | -1.1 | |||
2,886,599 | + | -1.6 | |||
2,886,599 | + | -0.6 | |||
2,886,599 | + | -3.1 | |||
2,886,600 | - | -0.4 | |||
2,886,600 | - | -1.2 | |||
2,886,600 | - | +0.3 | |||
2,886,626 | + | -0.2 | |||
2,886,626 | + | +0.1 | |||
2,886,627 | - | -0.8 | |||
2,886,645 | + | -0.7 | |||
2,886,671 | - | +0.3 | |||
2,886,754 | - | +0.3 | |||
2,886,754 | - | -0.1 | |||
2,886,970 | + | +0.0 | |||
2,886,970 | + | -0.2 | |||
2,886,971 | - | +0.2 | |||
2,887,063 | + | +0.1 | |||
2,887,064 | - | +0.3 |
Or see this region's nucleotide sequence