Strain Fitness in Pseudomonas simiae WCS417 around PS417_12730

Experiment: Chloramphenicol 0.015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_12725 and PS417_12730 are separated by 72 nucleotidesPS417_12730 and PS417_12735 are separated by 158 nucleotidesPS417_12735 and PS417_12740 are separated by 232 nucleotides PS417_12725: PS417_12725 - AraC family transcriptional regulator, at 2,774,756 to 2,775,703 _12725 PS417_12730: PS417_12730 - glycosyltransferase, at 2,775,776 to 2,777,065 _12730 PS417_12735: PS417_12735 - peroxidase, at 2,777,224 to 2,777,724 _12735 PS417_12740: PS417_12740 - secretion protein HlyD, at 2,777,957 to 2,779,258 _12740 Position (kb) 2775 2776 2777 2778Strain fitness (log2 ratio) -3 -2 -1 0 1at 2774.903 kb on - strand, within PS417_12725at 2775.063 kb on + strand, within PS417_12725at 2775.115 kb on - strand, within PS417_12725at 2775.525 kb on + strand, within PS417_12725at 2775.670 kb on - strandat 2775.738 kb on + strandat 2775.780 kb on - strandat 2775.816 kb on + strandat 2775.816 kb on + strandat 2775.816 kb on + strandat 2775.816 kb on + strandat 2775.816 kb on + strandat 2775.816 kb on + strandat 2775.817 kb on - strandat 2775.817 kb on - strandat 2775.817 kb on - strandat 2775.817 kb on - strandat 2775.830 kb on - strandat 2776.297 kb on - strand, within PS417_12730at 2776.297 kb on - strandat 2776.987 kb on + strandat 2777.151 kb on + strandat 2777.210 kb on + strandat 2777.211 kb on - strandat 2777.362 kb on - strand, within PS417_12735at 2777.691 kb on + strandat 2777.695 kb on + strandat 2777.722 kb on + strandat 2777.722 kb on + strandat 2777.723 kb on - strandat 2777.755 kb on + strandat 2777.851 kb on + strandat 2777.852 kb on - strandat 2777.866 kb on - strandat 2777.876 kb on + strandat 2777.877 kb on - strandat 2777.880 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.015 mg/ml
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2,774,903 - PS417_12725 0.16 +0.1
2,775,063 + PS417_12725 0.32 -0.4
2,775,115 - PS417_12725 0.38 +0.9
2,775,525 + PS417_12725 0.81 +0.2
2,775,670 - -3.0
2,775,738 + +0.6
2,775,780 - -0.1
2,775,816 + +0.2
2,775,816 + -1.3
2,775,816 + +0.4
2,775,816 + -1.0
2,775,816 + +0.0
2,775,816 + +0.2
2,775,817 - -0.1
2,775,817 - -0.6
2,775,817 - -0.7
2,775,817 - -0.6
2,775,830 - -0.7
2,776,297 - PS417_12730 0.40 -0.6
2,776,297 - -0.1
2,776,987 + -0.3
2,777,151 + +0.6
2,777,210 + +0.1
2,777,211 - +0.0
2,777,362 - PS417_12735 0.28 +0.4
2,777,691 + +0.1
2,777,695 + -0.2
2,777,722 + -0.4
2,777,722 + +0.4
2,777,723 - +1.3
2,777,755 + -0.1
2,777,851 + -0.4
2,777,852 - +0.2
2,777,866 - +0.6
2,777,876 + +0.2
2,777,877 - -0.1
2,777,880 + +0.3

Or see this region's nucleotide sequence