Experiment: Chloramphenicol 0.015 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_11365 and PS417_11370 are separated by 18 nucleotides PS417_11370 and PS417_11375 are separated by 14 nucleotides PS417_11375 and PS417_11380 overlap by 4 nucleotides PS417_11380 and PS417_11385 are separated by 51 nucleotides
PS417_11365: PS417_11365 - membrane protein, at 2,447,901 to 2,449,601
_11365
PS417_11370: PS417_11370 - DNA repair protein, at 2,449,620 to 2,450,246
_11370
PS417_11375: PS417_11375 - hypothetical protein, at 2,450,261 to 2,450,719
_11375
PS417_11380: PS417_11380 - peptidylprolyl isomerase, at 2,450,716 to 2,451,657
_11380
PS417_11385: PS417_11385 - LysR family transcriptional regulator, at 2,451,709 to 2,452,686
_11385
Position (kb)
2450
2451 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2449.390 kb on - strand, within PS417_11365 at 2449.395 kb on + strand, within PS417_11365 at 2449.396 kb on - strand, within PS417_11365 at 2449.396 kb on - strand, within PS417_11365 at 2449.396 kb on - strand, within PS417_11365 at 2449.396 kb on - strand, within PS417_11365 at 2449.470 kb on + strand at 2449.546 kb on - strand at 2449.546 kb on - strand at 2450.130 kb on - strand, within PS417_11370 at 2450.248 kb on - strand at 2450.438 kb on + strand, within PS417_11375 at 2450.438 kb on + strand, within PS417_11375 at 2450.439 kb on - strand, within PS417_11375 at 2451.097 kb on + strand, within PS417_11380 at 2451.098 kb on - strand, within PS417_11380 at 2451.098 kb on - strand, within PS417_11380 at 2451.200 kb on - strand, within PS417_11380
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.015 mg/ml remove 2,449,390 - PS417_11365 0.88 -0.2 2,449,395 + PS417_11365 0.88 -0.3 2,449,396 - PS417_11365 0.88 +0.3 2,449,396 - PS417_11365 0.88 -1.9 2,449,396 - PS417_11365 0.88 +0.1 2,449,396 - PS417_11365 0.88 -0.1 2,449,470 + +0.9 2,449,546 - -0.5 2,449,546 - +2.9 2,450,130 - PS417_11370 0.81 +0.3 2,450,248 - -0.9 2,450,438 + PS417_11375 0.39 +0.4 2,450,438 + PS417_11375 0.39 +1.4 2,450,439 - PS417_11375 0.39 -1.5 2,451,097 + PS417_11380 0.40 +0.0 2,451,098 - PS417_11380 0.41 +0.4 2,451,098 - PS417_11380 0.41 -1.5 2,451,200 - PS417_11380 0.51 -0.8
Or see this region's nucleotide sequence