Experiment: Chloramphenicol 0.015 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_10860 and PS417_10865 are separated by 277 nucleotides PS417_10865 and PS417_10870 are separated by 259 nucleotides PS417_10870 and PS417_10875 overlap by 4 nucleotides
PS417_10860: PS417_10860 - flagellar basal body rod protein FlgG, at 2,320,950 to 2,321,735
_10860
PS417_10865: PS417_10865 - GNAT family acetyltransferase, at 2,322,013 to 2,322,468
_10865
PS417_10870: PS417_10870 - GABA permease, at 2,322,728 to 2,324,137
_10870
PS417_10875: PS417_10875 - AraC family transcriptional regulator, at 2,324,134 to 2,325,210
_10875
Position (kb)
2322
2323
2324
2325 Strain fitness (log2 ratio)
-1
0
1
2 at 2322.038 kb on + strand at 2322.038 kb on + strand at 2322.039 kb on - strand at 2322.384 kb on - strand, within PS417_10865 at 2322.512 kb on + strand at 2322.512 kb on + strand at 2322.512 kb on + strand at 2322.603 kb on - strand at 2322.888 kb on - strand, within PS417_10870 at 2323.028 kb on + strand, within PS417_10870 at 2323.028 kb on + strand, within PS417_10870 at 2323.655 kb on + strand, within PS417_10870 at 2323.656 kb on - strand, within PS417_10870 at 2324.133 kb on + strand at 2324.133 kb on + strand at 2324.133 kb on + strand at 2324.134 kb on - strand at 2324.151 kb on - strand at 2324.151 kb on - strand at 2324.507 kb on - strand, within PS417_10875 at 2324.507 kb on - strand, within PS417_10875 at 2324.851 kb on + strand, within PS417_10875 at 2324.896 kb on + strand, within PS417_10875 at 2324.921 kb on - strand, within PS417_10875 at 2324.921 kb on - strand, within PS417_10875 at 2324.924 kb on - strand, within PS417_10875
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.015 mg/ml remove 2,322,038 + +0.8 2,322,038 + -0.1 2,322,039 - -0.1 2,322,384 - PS417_10865 0.81 +0.4 2,322,512 + -0.2 2,322,512 + -0.2 2,322,512 + -0.1 2,322,603 - +1.6 2,322,888 - PS417_10870 0.11 +1.8 2,323,028 + PS417_10870 0.21 +0.3 2,323,028 + PS417_10870 0.21 +0.5 2,323,655 + PS417_10870 0.66 +0.6 2,323,656 - PS417_10870 0.66 -0.2 2,324,133 + -0.2 2,324,133 + -0.2 2,324,133 + +0.1 2,324,134 - +0.6 2,324,151 - -0.1 2,324,151 - -0.0 2,324,507 - PS417_10875 0.35 +0.0 2,324,507 - PS417_10875 0.35 +0.5 2,324,851 + PS417_10875 0.67 -0.7 2,324,896 + PS417_10875 0.71 +0.2 2,324,921 - PS417_10875 0.73 +0.5 2,324,921 - PS417_10875 0.73 +0.0 2,324,924 - PS417_10875 0.73 +0.0
Or see this region's nucleotide sequence