Strain Fitness in Pseudomonas simiae WCS417 around PS417_09610
Experiment: Chloramphenicol 0.015 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Chloramphenicol 0.015 mg/ml |
|---|---|---|---|---|---|
| remove | |||||
| 2,080,974 | + | PS417_09605 | 0.63 | +0.4 | |
| 2,080,975 | - | PS417_09605 | 0.63 | -0.2 | |
| 2,081,523 | - | -0.4 | |||
| 2,081,753 | + | PS417_09610 | 0.24 | +0.4 | |
| 2,081,910 | + | PS417_09610 | 0.36 | -0.1 | |
| 2,081,912 | + | PS417_09610 | 0.36 | +1.2 | |
| 2,081,912 | + | PS417_09610 | 0.36 | +0.6 | |
| 2,081,913 | - | -1.3 | |||
| 2,081,913 | - | PS417_09610 | 0.36 | +0.7 | |
| 2,081,913 | - | PS417_09610 | 0.36 | +0.9 | |
| 2,082,394 | - | PS417_09610 | 0.73 | +0.8 | |
| 2,082,413 | - | PS417_09610 | 0.74 | +0.1 | |
| 2,082,416 | + | PS417_09610 | 0.74 | -1.1 | |
| 2,082,655 | + | +0.0 | |||
| 2,082,655 | + | +0.7 | |||
| 2,082,655 | + | -0.3 | |||
| 2,082,656 | - | +0.4 | |||
| 2,082,893 | + | PS417_09615 | 0.12 | -0.0 | |
| 2,082,894 | - | PS417_09615 | 0.12 | -0.3 | |
| 2,083,204 | - | PS417_09615 | 0.38 | -0.1 | |
| 2,083,204 | - | PS417_09615 | 0.38 | +1.0 | |
| 2,083,345 | + | PS417_09615 | 0.50 | +0.7 | |
| 2,083,357 | - | PS417_09615 | 0.51 | +0.5 |
Or see this region's nucleotide sequence