Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4507

Experiment: L-Glutamic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4506 and Echvi_4507 are separated by 10 nucleotidesEchvi_4507 and Echvi_4508 overlap by 4 nucleotides Echvi_4506: Echvi_4506 - Gluconolactonase, at 5,382,391 to 5,383,494 _4506 Echvi_4507: Echvi_4507 - hypothetical protein, at 5,383,505 to 5,383,915 _4507 Echvi_4508: Echvi_4508 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 5,383,912 to 5,384,931 _4508 Position (kb) 5383 5384Strain fitness (log2 ratio) -2 -1 0 1 2at 5382.506 kb on - strand, within Echvi_4506at 5382.551 kb on + strand, within Echvi_4506at 5382.552 kb on - strand, within Echvi_4506at 5382.671 kb on + strand, within Echvi_4506at 5382.908 kb on - strand, within Echvi_4506at 5383.109 kb on - strand, within Echvi_4506at 5383.114 kb on + strand, within Echvi_4506at 5383.114 kb on + strand, within Echvi_4506at 5383.142 kb on + strand, within Echvi_4506at 5383.142 kb on + strand, within Echvi_4506at 5383.162 kb on + strand, within Echvi_4506at 5383.163 kb on - strand, within Echvi_4506at 5383.284 kb on + strand, within Echvi_4506at 5383.284 kb on + strand, within Echvi_4506at 5383.284 kb on + strand, within Echvi_4506at 5383.284 kb on + strand, within Echvi_4506at 5383.285 kb on - strand, within Echvi_4506at 5383.303 kb on + strand, within Echvi_4506at 5383.304 kb on - strand, within Echvi_4506at 5383.304 kb on - strand, within Echvi_4506at 5383.330 kb on - strand, within Echvi_4506at 5383.337 kb on + strand, within Echvi_4506at 5383.390 kb on + strandat 5383.465 kb on + strandat 5383.474 kb on + strandat 5383.475 kb on - strandat 5383.475 kb on - strandat 5383.475 kb on - strandat 5383.530 kb on + strandat 5383.530 kb on + strandat 5383.531 kb on - strandat 5383.531 kb on - strandat 5383.531 kb on - strandat 5383.603 kb on + strand, within Echvi_4507at 5383.604 kb on - strand, within Echvi_4507at 5383.604 kb on - strand, within Echvi_4507at 5383.780 kb on + strand, within Echvi_4507at 5383.781 kb on - strand, within Echvi_4507at 5383.804 kb on + strand, within Echvi_4507at 5383.805 kb on - strand, within Echvi_4507at 5383.805 kb on - strand, within Echvi_4507at 5383.846 kb on + strand, within Echvi_4507at 5383.847 kb on - strand, within Echvi_4507at 5383.993 kb on - strandat 5383.994 kb on + strandat 5383.995 kb on - strandat 5383.995 kb on - strandat 5384.008 kb on + strandat 5384.009 kb on - strandat 5384.075 kb on - strand, within Echvi_4508at 5384.075 kb on - strand, within Echvi_4508at 5384.076 kb on + strand, within Echvi_4508at 5384.077 kb on - strand, within Echvi_4508at 5384.186 kb on + strand, within Echvi_4508at 5384.186 kb on + strand, within Echvi_4508at 5384.187 kb on - strand, within Echvi_4508at 5384.187 kb on - strand, within Echvi_4508at 5384.187 kb on - strand, within Echvi_4508at 5384.187 kb on - strand, within Echvi_4508at 5384.275 kb on - strand, within Echvi_4508at 5384.299 kb on - strand, within Echvi_4508at 5384.374 kb on - strand, within Echvi_4508at 5384.382 kb on + strand, within Echvi_4508at 5384.393 kb on - strand, within Echvi_4508at 5384.464 kb on + strand, within Echvi_4508at 5384.465 kb on - strand, within Echvi_4508at 5384.509 kb on + strand, within Echvi_4508at 5384.527 kb on + strand, within Echvi_4508at 5384.528 kb on - strand, within Echvi_4508at 5384.542 kb on + strand, within Echvi_4508at 5384.542 kb on + strand, within Echvi_4508at 5384.584 kb on + strand, within Echvi_4508at 5384.585 kb on - strand, within Echvi_4508at 5384.681 kb on - strand, within Echvi_4508at 5384.681 kb on - strand, within Echvi_4508at 5384.759 kb on + strand, within Echvi_4508at 5384.844 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
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5,382,506 - Echvi_4506 0.10 -0.6
5,382,551 + Echvi_4506 0.14 -0.3
5,382,552 - Echvi_4506 0.15 +0.8
5,382,671 + Echvi_4506 0.25 -1.9
5,382,908 - Echvi_4506 0.47 -0.6
5,383,109 - Echvi_4506 0.65 -1.9
5,383,114 + Echvi_4506 0.65 -1.8
5,383,114 + Echvi_4506 0.65 +0.1
5,383,142 + Echvi_4506 0.68 +0.8
5,383,142 + Echvi_4506 0.68 -0.1
5,383,162 + Echvi_4506 0.70 +1.0
5,383,163 - Echvi_4506 0.70 -0.2
5,383,284 + Echvi_4506 0.81 +0.3
5,383,284 + Echvi_4506 0.81 +0.3
5,383,284 + Echvi_4506 0.81 +0.8
5,383,284 + Echvi_4506 0.81 +0.4
5,383,285 - Echvi_4506 0.81 +0.5
5,383,303 + Echvi_4506 0.83 -0.5
5,383,304 - Echvi_4506 0.83 -0.3
5,383,304 - Echvi_4506 0.83 +1.5
5,383,330 - Echvi_4506 0.85 +0.5
5,383,337 + Echvi_4506 0.86 -0.5
5,383,390 + -0.3
5,383,465 + +0.2
5,383,474 + -0.2
5,383,475 - +1.5
5,383,475 - +0.2
5,383,475 - +0.4
5,383,530 + +0.8
5,383,530 + -0.2
5,383,531 - -0.6
5,383,531 - +0.1
5,383,531 - -0.2
5,383,603 + Echvi_4507 0.24 -0.5
5,383,604 - Echvi_4507 0.24 -1.0
5,383,604 - Echvi_4507 0.24 -1.1
5,383,780 + Echvi_4507 0.67 -0.0
5,383,781 - Echvi_4507 0.67 -1.0
5,383,804 + Echvi_4507 0.73 +0.5
5,383,805 - Echvi_4507 0.73 -0.5
5,383,805 - Echvi_4507 0.73 -0.4
5,383,846 + Echvi_4507 0.83 -1.6
5,383,847 - Echvi_4507 0.83 -0.6
5,383,993 - -0.6
5,383,994 + +0.7
5,383,995 - -0.1
5,383,995 - +0.3
5,384,008 + -1.7
5,384,009 - +1.0
5,384,075 - Echvi_4508 0.16 -0.1
5,384,075 - Echvi_4508 0.16 -0.4
5,384,076 + Echvi_4508 0.16 -0.5
5,384,077 - Echvi_4508 0.16 -0.6
5,384,186 + Echvi_4508 0.27 -0.0
5,384,186 + Echvi_4508 0.27 +1.3
5,384,187 - Echvi_4508 0.27 +1.8
5,384,187 - Echvi_4508 0.27 -0.3
5,384,187 - Echvi_4508 0.27 -0.2
5,384,187 - Echvi_4508 0.27 -0.9
5,384,275 - Echvi_4508 0.36 +0.2
5,384,299 - Echvi_4508 0.38 +0.7
5,384,374 - Echvi_4508 0.45 -0.5
5,384,382 + Echvi_4508 0.46 -2.3
5,384,393 - Echvi_4508 0.47 +0.4
5,384,464 + Echvi_4508 0.54 +0.1
5,384,465 - Echvi_4508 0.54 +1.7
5,384,509 + Echvi_4508 0.59 +0.6
5,384,527 + Echvi_4508 0.60 -0.1
5,384,528 - Echvi_4508 0.60 +1.0
5,384,542 + Echvi_4508 0.62 -1.2
5,384,542 + Echvi_4508 0.62 +0.3
5,384,584 + Echvi_4508 0.66 -1.0
5,384,585 - Echvi_4508 0.66 +0.8
5,384,681 - Echvi_4508 0.75 +0.3
5,384,681 - Echvi_4508 0.75 +1.3
5,384,759 + Echvi_4508 0.83 -0.8
5,384,844 - -1.3

Or see this region's nucleotide sequence