Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4296

Experiment: L-Glutamic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4295 and Echvi_4296 are separated by 3 nucleotidesEchvi_4296 and Echvi_4297 are separated by 115 nucleotides Echvi_4295: Echvi_4295 - Predicted RNA polymerase sigma factor containing a TPR repeat domain, at 5,137,186 to 5,138,430 _4295 Echvi_4296: Echvi_4296 - Uncharacterized protein conserved in bacteria, at 5,138,434 to 5,138,778 _4296 Echvi_4297: Echvi_4297 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 5,138,894 to 5,139,739 _4297 Position (kb) 5138 5139Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5137.453 kb on + strand, within Echvi_4295at 5137.467 kb on - strandat 5137.492 kb on - strand, within Echvi_4295at 5137.522 kb on + strand, within Echvi_4295at 5137.523 kb on - strand, within Echvi_4295at 5137.523 kb on - strand, within Echvi_4295at 5137.523 kb on - strand, within Echvi_4295at 5137.523 kb on - strand, within Echvi_4295at 5137.523 kb on - strand, within Echvi_4295at 5137.523 kb on - strand, within Echvi_4295at 5137.581 kb on - strand, within Echvi_4295at 5137.583 kb on + strand, within Echvi_4295at 5137.584 kb on - strand, within Echvi_4295at 5137.608 kb on + strand, within Echvi_4295at 5137.609 kb on - strand, within Echvi_4295at 5137.609 kb on - strand, within Echvi_4295at 5137.754 kb on - strand, within Echvi_4295at 5137.754 kb on - strand, within Echvi_4295at 5137.768 kb on + strand, within Echvi_4295at 5137.769 kb on - strand, within Echvi_4295at 5137.823 kb on + strand, within Echvi_4295at 5137.844 kb on + strand, within Echvi_4295at 5137.844 kb on + strand, within Echvi_4295at 5137.845 kb on - strand, within Echvi_4295at 5137.845 kb on - strand, within Echvi_4295at 5137.921 kb on - strand, within Echvi_4295at 5137.957 kb on - strand, within Echvi_4295at 5138.123 kb on - strand, within Echvi_4295at 5138.229 kb on + strand, within Echvi_4295at 5138.230 kb on - strand, within Echvi_4295at 5138.230 kb on - strand, within Echvi_4295at 5138.230 kb on - strand, within Echvi_4295at 5138.308 kb on - strandat 5138.353 kb on + strandat 5138.353 kb on + strandat 5138.357 kb on - strandat 5138.357 kb on - strandat 5138.409 kb on + strandat 5138.409 kb on + strandat 5138.409 kb on + strandat 5138.410 kb on - strandat 5138.466 kb on + strandat 5138.466 kb on + strandat 5138.467 kb on - strandat 5138.467 kb on - strandat 5138.467 kb on - strandat 5138.467 kb on - strandat 5138.496 kb on + strand, within Echvi_4296at 5138.580 kb on - strand, within Echvi_4296at 5138.580 kb on - strand, within Echvi_4296at 5138.700 kb on + strand, within Echvi_4296at 5138.793 kb on + strandat 5138.804 kb on + strandat 5138.805 kb on - strandat 5138.872 kb on + strandat 5138.872 kb on + strandat 5138.873 kb on - strandat 5138.879 kb on + strandat 5138.879 kb on + strandat 5138.879 kb on + strandat 5138.879 kb on + strandat 5138.879 kb on + strandat 5138.879 kb on + strandat 5138.880 kb on - strandat 5138.920 kb on + strandat 5138.927 kb on + strandat 5138.927 kb on + strandat 5138.928 kb on - strandat 5138.928 kb on - strandat 5138.950 kb on + strandat 5138.950 kb on + strandat 5138.950 kb on + strandat 5138.950 kb on + strandat 5138.954 kb on + strandat 5138.955 kb on - strandat 5138.955 kb on - strandat 5138.976 kb on - strandat 5139.028 kb on + strand, within Echvi_4297at 5139.028 kb on + strand, within Echvi_4297at 5139.029 kb on - strand, within Echvi_4297at 5139.030 kb on + strand, within Echvi_4297at 5139.031 kb on - strand, within Echvi_4297at 5139.059 kb on + strand, within Echvi_4297at 5139.059 kb on + strand, within Echvi_4297at 5139.059 kb on + strand, within Echvi_4297at 5139.060 kb on - strand, within Echvi_4297at 5139.066 kb on - strand, within Echvi_4297at 5139.070 kb on + strand, within Echvi_4297at 5139.070 kb on + strand, within Echvi_4297at 5139.071 kb on - strand, within Echvi_4297at 5139.089 kb on + strand, within Echvi_4297at 5139.090 kb on - strand, within Echvi_4297at 5139.119 kb on + strand, within Echvi_4297at 5139.120 kb on - strandat 5139.133 kb on + strand, within Echvi_4297at 5139.134 kb on - strand, within Echvi_4297at 5139.134 kb on - strand, within Echvi_4297at 5139.139 kb on + strand, within Echvi_4297at 5139.139 kb on + strand, within Echvi_4297at 5139.140 kb on - strand, within Echvi_4297at 5139.140 kb on - strand, within Echvi_4297at 5139.145 kb on + strand, within Echvi_4297at 5139.146 kb on - strand, within Echvi_4297at 5139.147 kb on + strand, within Echvi_4297at 5139.161 kb on - strand, within Echvi_4297at 5139.176 kb on + strand, within Echvi_4297at 5139.177 kb on - strand, within Echvi_4297at 5139.180 kb on - strand, within Echvi_4297at 5139.224 kb on + strand, within Echvi_4297at 5139.225 kb on - strand, within Echvi_4297at 5139.243 kb on - strand, within Echvi_4297at 5139.247 kb on - strand, within Echvi_4297at 5139.247 kb on - strand, within Echvi_4297at 5139.268 kb on + strand, within Echvi_4297at 5139.268 kb on + strand, within Echvi_4297at 5139.287 kb on - strand, within Echvi_4297at 5139.295 kb on + strand, within Echvi_4297at 5139.295 kb on + strand, within Echvi_4297at 5139.296 kb on - strand, within Echvi_4297at 5139.401 kb on + strand, within Echvi_4297at 5139.431 kb on + strand, within Echvi_4297at 5139.431 kb on + strand, within Echvi_4297at 5139.431 kb on + strand, within Echvi_4297at 5139.432 kb on - strand, within Echvi_4297at 5139.432 kb on - strand, within Echvi_4297at 5139.432 kb on - strand, within Echvi_4297at 5139.446 kb on + strand, within Echvi_4297at 5139.447 kb on - strand, within Echvi_4297at 5139.447 kb on - strand, within Echvi_4297at 5139.537 kb on + strand, within Echvi_4297at 5139.563 kb on - strand, within Echvi_4297at 5139.627 kb on + strand, within Echvi_4297at 5139.630 kb on - strand, within Echvi_4297at 5139.643 kb on + strand, within Echvi_4297at 5139.663 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
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5,137,453 + Echvi_4295 0.21 -0.1
5,137,467 - +0.4
5,137,492 - Echvi_4295 0.25 +1.6
5,137,522 + Echvi_4295 0.27 -0.7
5,137,523 - Echvi_4295 0.27 -0.2
5,137,523 - Echvi_4295 0.27 -0.6
5,137,523 - Echvi_4295 0.27 +0.8
5,137,523 - Echvi_4295 0.27 +0.2
5,137,523 - Echvi_4295 0.27 -0.9
5,137,523 - Echvi_4295 0.27 +1.1
5,137,581 - Echvi_4295 0.32 -0.6
5,137,583 + Echvi_4295 0.32 -0.8
5,137,584 - Echvi_4295 0.32 -1.2
5,137,608 + Echvi_4295 0.34 +0.0
5,137,609 - Echvi_4295 0.34 -0.3
5,137,609 - Echvi_4295 0.34 -1.4
5,137,754 - Echvi_4295 0.46 +0.3
5,137,754 - Echvi_4295 0.46 -1.8
5,137,768 + Echvi_4295 0.47 -0.6
5,137,769 - Echvi_4295 0.47 +1.5
5,137,823 + Echvi_4295 0.51 -0.5
5,137,844 + Echvi_4295 0.53 +2.5
5,137,844 + Echvi_4295 0.53 -0.3
5,137,845 - Echvi_4295 0.53 -2.0
5,137,845 - Echvi_4295 0.53 -0.9
5,137,921 - Echvi_4295 0.59 -0.6
5,137,957 - Echvi_4295 0.62 +0.9
5,138,123 - Echvi_4295 0.75 -1.6
5,138,229 + Echvi_4295 0.84 -2.1
5,138,230 - Echvi_4295 0.84 +0.7
5,138,230 - Echvi_4295 0.84 -0.9
5,138,230 - Echvi_4295 0.84 +0.7
5,138,308 - +0.9
5,138,353 + -0.3
5,138,353 + +0.2
5,138,357 - -0.5
5,138,357 - +0.4
5,138,409 + +0.6
5,138,409 + +0.2
5,138,409 + -0.1
5,138,410 - -0.2
5,138,466 + +0.4
5,138,466 + -0.0
5,138,467 - -0.1
5,138,467 - +0.4
5,138,467 - +0.4
5,138,467 - -0.5
5,138,496 + Echvi_4296 0.18 -0.8
5,138,580 - Echvi_4296 0.42 +0.9
5,138,580 - Echvi_4296 0.42 -2.3
5,138,700 + Echvi_4296 0.77 -0.1
5,138,793 + -0.0
5,138,804 + -0.2
5,138,805 - +0.1
5,138,872 + +0.4
5,138,872 + +0.1
5,138,873 - -0.6
5,138,879 + +0.1
5,138,879 + -0.3
5,138,879 + +0.9
5,138,879 + +1.1
5,138,879 + +0.3
5,138,879 + -0.5
5,138,880 - -0.8
5,138,920 + -0.1
5,138,927 + +1.9
5,138,927 + -0.3
5,138,928 - -0.4
5,138,928 - -1.1
5,138,950 + +0.5
5,138,950 + -0.3
5,138,950 + -0.5
5,138,950 + +0.4
5,138,954 + -0.3
5,138,955 - +1.6
5,138,955 - +0.1
5,138,976 - -0.4
5,139,028 + Echvi_4297 0.16 +0.4
5,139,028 + Echvi_4297 0.16 -0.2
5,139,029 - Echvi_4297 0.16 -1.1
5,139,030 + Echvi_4297 0.16 +0.9
5,139,031 - Echvi_4297 0.16 +0.7
5,139,059 + Echvi_4297 0.20 +0.6
5,139,059 + Echvi_4297 0.20 -0.7
5,139,059 + Echvi_4297 0.20 +0.9
5,139,060 - Echvi_4297 0.20 +0.4
5,139,066 - Echvi_4297 0.20 +0.4
5,139,070 + Echvi_4297 0.21 -0.2
5,139,070 + Echvi_4297 0.21 -0.6
5,139,071 - Echvi_4297 0.21 +1.2
5,139,089 + Echvi_4297 0.23 -0.0
5,139,090 - Echvi_4297 0.23 -1.1
5,139,119 + Echvi_4297 0.27 -1.1
5,139,120 - +1.4
5,139,133 + Echvi_4297 0.28 -0.0
5,139,134 - Echvi_4297 0.28 +0.0
5,139,134 - Echvi_4297 0.28 +1.2
5,139,139 + Echvi_4297 0.29 +0.1
5,139,139 + Echvi_4297 0.29 +0.4
5,139,140 - Echvi_4297 0.29 -0.8
5,139,140 - Echvi_4297 0.29 +1.1
5,139,145 + Echvi_4297 0.30 -0.1
5,139,146 - Echvi_4297 0.30 +0.8
5,139,147 + Echvi_4297 0.30 +0.4
5,139,161 - Echvi_4297 0.32 -1.4
5,139,176 + Echvi_4297 0.33 -1.1
5,139,177 - Echvi_4297 0.33 +0.9
5,139,180 - Echvi_4297 0.34 +0.6
5,139,224 + Echvi_4297 0.39 -0.7
5,139,225 - Echvi_4297 0.39 -2.8
5,139,243 - Echvi_4297 0.41 -1.4
5,139,247 - Echvi_4297 0.42 -0.6
5,139,247 - Echvi_4297 0.42 +0.4
5,139,268 + Echvi_4297 0.44 -0.2
5,139,268 + Echvi_4297 0.44 -1.7
5,139,287 - Echvi_4297 0.46 +0.6
5,139,295 + Echvi_4297 0.47 +0.8
5,139,295 + Echvi_4297 0.47 -0.0
5,139,296 - Echvi_4297 0.48 -0.2
5,139,401 + Echvi_4297 0.60 -0.1
5,139,431 + Echvi_4297 0.63 -0.2
5,139,431 + Echvi_4297 0.63 -0.1
5,139,431 + Echvi_4297 0.63 -0.4
5,139,432 - Echvi_4297 0.64 +1.5
5,139,432 - Echvi_4297 0.64 +0.6
5,139,432 - Echvi_4297 0.64 -1.3
5,139,446 + Echvi_4297 0.65 -0.9
5,139,447 - Echvi_4297 0.65 -1.2
5,139,447 - Echvi_4297 0.65 -0.1
5,139,537 + Echvi_4297 0.76 +0.4
5,139,563 - Echvi_4297 0.79 -0.7
5,139,627 + Echvi_4297 0.87 +1.9
5,139,630 - Echvi_4297 0.87 +0.0
5,139,643 + Echvi_4297 0.89 +0.5
5,139,663 - -1.0

Or see this region's nucleotide sequence