Experiment: L-Glutamic (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4295 and Echvi_4296 are separated by 3 nucleotides Echvi_4296 and Echvi_4297 are separated by 115 nucleotides
Echvi_4295: Echvi_4295 - Predicted RNA polymerase sigma factor containing a TPR repeat domain, at 5,137,186 to 5,138,430
_4295
Echvi_4296: Echvi_4296 - Uncharacterized protein conserved in bacteria, at 5,138,434 to 5,138,778
_4296
Echvi_4297: Echvi_4297 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 5,138,894 to 5,139,739
_4297
Position (kb)
5138
5139 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 5137.453 kb on + strand, within Echvi_4295 at 5137.467 kb on - strand at 5137.492 kb on - strand, within Echvi_4295 at 5137.522 kb on + strand, within Echvi_4295 at 5137.523 kb on - strand, within Echvi_4295 at 5137.523 kb on - strand, within Echvi_4295 at 5137.523 kb on - strand, within Echvi_4295 at 5137.523 kb on - strand, within Echvi_4295 at 5137.523 kb on - strand, within Echvi_4295 at 5137.523 kb on - strand, within Echvi_4295 at 5137.581 kb on - strand, within Echvi_4295 at 5137.583 kb on + strand, within Echvi_4295 at 5137.584 kb on - strand, within Echvi_4295 at 5137.608 kb on + strand, within Echvi_4295 at 5137.609 kb on - strand, within Echvi_4295 at 5137.609 kb on - strand, within Echvi_4295 at 5137.754 kb on - strand, within Echvi_4295 at 5137.754 kb on - strand, within Echvi_4295 at 5137.768 kb on + strand, within Echvi_4295 at 5137.769 kb on - strand, within Echvi_4295 at 5137.823 kb on + strand, within Echvi_4295 at 5137.844 kb on + strand, within Echvi_4295 at 5137.844 kb on + strand, within Echvi_4295 at 5137.845 kb on - strand, within Echvi_4295 at 5137.845 kb on - strand, within Echvi_4295 at 5137.921 kb on - strand, within Echvi_4295 at 5137.957 kb on - strand, within Echvi_4295 at 5138.123 kb on - strand, within Echvi_4295 at 5138.229 kb on + strand, within Echvi_4295 at 5138.230 kb on - strand, within Echvi_4295 at 5138.230 kb on - strand, within Echvi_4295 at 5138.230 kb on - strand, within Echvi_4295 at 5138.308 kb on - strand at 5138.353 kb on + strand at 5138.353 kb on + strand at 5138.357 kb on - strand at 5138.357 kb on - strand at 5138.409 kb on + strand at 5138.409 kb on + strand at 5138.409 kb on + strand at 5138.410 kb on - strand at 5138.466 kb on + strand at 5138.466 kb on + strand at 5138.467 kb on - strand at 5138.467 kb on - strand at 5138.467 kb on - strand at 5138.467 kb on - strand at 5138.496 kb on + strand, within Echvi_4296 at 5138.580 kb on - strand, within Echvi_4296 at 5138.580 kb on - strand, within Echvi_4296 at 5138.700 kb on + strand, within Echvi_4296 at 5138.793 kb on + strand at 5138.804 kb on + strand at 5138.805 kb on - strand at 5138.872 kb on + strand at 5138.872 kb on + strand at 5138.873 kb on - strand at 5138.879 kb on + strand at 5138.879 kb on + strand at 5138.879 kb on + strand at 5138.879 kb on + strand at 5138.879 kb on + strand at 5138.879 kb on + strand at 5138.880 kb on - strand at 5138.920 kb on + strand at 5138.927 kb on + strand at 5138.927 kb on + strand at 5138.928 kb on - strand at 5138.928 kb on - strand at 5138.950 kb on + strand at 5138.950 kb on + strand at 5138.950 kb on + strand at 5138.950 kb on + strand at 5138.954 kb on + strand at 5138.955 kb on - strand at 5138.955 kb on - strand at 5138.976 kb on - strand at 5139.028 kb on + strand, within Echvi_4297 at 5139.028 kb on + strand, within Echvi_4297 at 5139.029 kb on - strand, within Echvi_4297 at 5139.030 kb on + strand, within Echvi_4297 at 5139.031 kb on - strand, within Echvi_4297 at 5139.059 kb on + strand, within Echvi_4297 at 5139.059 kb on + strand, within Echvi_4297 at 5139.059 kb on + strand, within Echvi_4297 at 5139.060 kb on - strand, within Echvi_4297 at 5139.066 kb on - strand, within Echvi_4297 at 5139.070 kb on + strand, within Echvi_4297 at 5139.070 kb on + strand, within Echvi_4297 at 5139.071 kb on - strand, within Echvi_4297 at 5139.089 kb on + strand, within Echvi_4297 at 5139.090 kb on - strand, within Echvi_4297 at 5139.119 kb on + strand, within Echvi_4297 at 5139.120 kb on - strand at 5139.133 kb on + strand, within Echvi_4297 at 5139.134 kb on - strand, within Echvi_4297 at 5139.134 kb on - strand, within Echvi_4297 at 5139.139 kb on + strand, within Echvi_4297 at 5139.139 kb on + strand, within Echvi_4297 at 5139.140 kb on - strand, within Echvi_4297 at 5139.140 kb on - strand, within Echvi_4297 at 5139.145 kb on + strand, within Echvi_4297 at 5139.146 kb on - strand, within Echvi_4297 at 5139.147 kb on + strand, within Echvi_4297 at 5139.161 kb on - strand, within Echvi_4297 at 5139.176 kb on + strand, within Echvi_4297 at 5139.177 kb on - strand, within Echvi_4297 at 5139.180 kb on - strand, within Echvi_4297 at 5139.224 kb on + strand, within Echvi_4297 at 5139.225 kb on - strand, within Echvi_4297 at 5139.243 kb on - strand, within Echvi_4297 at 5139.247 kb on - strand, within Echvi_4297 at 5139.247 kb on - strand, within Echvi_4297 at 5139.268 kb on + strand, within Echvi_4297 at 5139.268 kb on + strand, within Echvi_4297 at 5139.287 kb on - strand, within Echvi_4297 at 5139.295 kb on + strand, within Echvi_4297 at 5139.295 kb on + strand, within Echvi_4297 at 5139.296 kb on - strand, within Echvi_4297 at 5139.401 kb on + strand, within Echvi_4297 at 5139.431 kb on + strand, within Echvi_4297 at 5139.431 kb on + strand, within Echvi_4297 at 5139.431 kb on + strand, within Echvi_4297 at 5139.432 kb on - strand, within Echvi_4297 at 5139.432 kb on - strand, within Echvi_4297 at 5139.432 kb on - strand, within Echvi_4297 at 5139.446 kb on + strand, within Echvi_4297 at 5139.447 kb on - strand, within Echvi_4297 at 5139.447 kb on - strand, within Echvi_4297 at 5139.537 kb on + strand, within Echvi_4297 at 5139.563 kb on - strand, within Echvi_4297 at 5139.627 kb on + strand, within Echvi_4297 at 5139.630 kb on - strand, within Echvi_4297 at 5139.643 kb on + strand, within Echvi_4297 at 5139.663 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (N) remove 5,137,453 + Echvi_4295 0.21 -0.1 5,137,467 - +0.4 5,137,492 - Echvi_4295 0.25 +1.6 5,137,522 + Echvi_4295 0.27 -0.7 5,137,523 - Echvi_4295 0.27 -0.2 5,137,523 - Echvi_4295 0.27 -0.6 5,137,523 - Echvi_4295 0.27 +0.8 5,137,523 - Echvi_4295 0.27 +0.2 5,137,523 - Echvi_4295 0.27 -0.9 5,137,523 - Echvi_4295 0.27 +1.1 5,137,581 - Echvi_4295 0.32 -0.6 5,137,583 + Echvi_4295 0.32 -0.8 5,137,584 - Echvi_4295 0.32 -1.2 5,137,608 + Echvi_4295 0.34 +0.0 5,137,609 - Echvi_4295 0.34 -0.3 5,137,609 - Echvi_4295 0.34 -1.4 5,137,754 - Echvi_4295 0.46 +0.3 5,137,754 - Echvi_4295 0.46 -1.8 5,137,768 + Echvi_4295 0.47 -0.6 5,137,769 - Echvi_4295 0.47 +1.5 5,137,823 + Echvi_4295 0.51 -0.5 5,137,844 + Echvi_4295 0.53 +2.5 5,137,844 + Echvi_4295 0.53 -0.3 5,137,845 - Echvi_4295 0.53 -2.0 5,137,845 - Echvi_4295 0.53 -0.9 5,137,921 - Echvi_4295 0.59 -0.6 5,137,957 - Echvi_4295 0.62 +0.9 5,138,123 - Echvi_4295 0.75 -1.6 5,138,229 + Echvi_4295 0.84 -2.1 5,138,230 - Echvi_4295 0.84 +0.7 5,138,230 - Echvi_4295 0.84 -0.9 5,138,230 - Echvi_4295 0.84 +0.7 5,138,308 - +0.9 5,138,353 + -0.3 5,138,353 + +0.2 5,138,357 - -0.5 5,138,357 - +0.4 5,138,409 + +0.6 5,138,409 + +0.2 5,138,409 + -0.1 5,138,410 - -0.2 5,138,466 + +0.4 5,138,466 + -0.0 5,138,467 - -0.1 5,138,467 - +0.4 5,138,467 - +0.4 5,138,467 - -0.5 5,138,496 + Echvi_4296 0.18 -0.8 5,138,580 - Echvi_4296 0.42 +0.9 5,138,580 - Echvi_4296 0.42 -2.3 5,138,700 + Echvi_4296 0.77 -0.1 5,138,793 + -0.0 5,138,804 + -0.2 5,138,805 - +0.1 5,138,872 + +0.4 5,138,872 + +0.1 5,138,873 - -0.6 5,138,879 + +0.1 5,138,879 + -0.3 5,138,879 + +0.9 5,138,879 + +1.1 5,138,879 + +0.3 5,138,879 + -0.5 5,138,880 - -0.8 5,138,920 + -0.1 5,138,927 + +1.9 5,138,927 + -0.3 5,138,928 - -0.4 5,138,928 - -1.1 5,138,950 + +0.5 5,138,950 + -0.3 5,138,950 + -0.5 5,138,950 + +0.4 5,138,954 + -0.3 5,138,955 - +1.6 5,138,955 - +0.1 5,138,976 - -0.4 5,139,028 + Echvi_4297 0.16 +0.4 5,139,028 + Echvi_4297 0.16 -0.2 5,139,029 - Echvi_4297 0.16 -1.1 5,139,030 + Echvi_4297 0.16 +0.9 5,139,031 - Echvi_4297 0.16 +0.7 5,139,059 + Echvi_4297 0.20 +0.6 5,139,059 + Echvi_4297 0.20 -0.7 5,139,059 + Echvi_4297 0.20 +0.9 5,139,060 - Echvi_4297 0.20 +0.4 5,139,066 - Echvi_4297 0.20 +0.4 5,139,070 + Echvi_4297 0.21 -0.2 5,139,070 + Echvi_4297 0.21 -0.6 5,139,071 - Echvi_4297 0.21 +1.2 5,139,089 + Echvi_4297 0.23 -0.0 5,139,090 - Echvi_4297 0.23 -1.1 5,139,119 + Echvi_4297 0.27 -1.1 5,139,120 - +1.4 5,139,133 + Echvi_4297 0.28 -0.0 5,139,134 - Echvi_4297 0.28 +0.0 5,139,134 - Echvi_4297 0.28 +1.2 5,139,139 + Echvi_4297 0.29 +0.1 5,139,139 + Echvi_4297 0.29 +0.4 5,139,140 - Echvi_4297 0.29 -0.8 5,139,140 - Echvi_4297 0.29 +1.1 5,139,145 + Echvi_4297 0.30 -0.1 5,139,146 - Echvi_4297 0.30 +0.8 5,139,147 + Echvi_4297 0.30 +0.4 5,139,161 - Echvi_4297 0.32 -1.4 5,139,176 + Echvi_4297 0.33 -1.1 5,139,177 - Echvi_4297 0.33 +0.9 5,139,180 - Echvi_4297 0.34 +0.6 5,139,224 + Echvi_4297 0.39 -0.7 5,139,225 - Echvi_4297 0.39 -2.8 5,139,243 - Echvi_4297 0.41 -1.4 5,139,247 - Echvi_4297 0.42 -0.6 5,139,247 - Echvi_4297 0.42 +0.4 5,139,268 + Echvi_4297 0.44 -0.2 5,139,268 + Echvi_4297 0.44 -1.7 5,139,287 - Echvi_4297 0.46 +0.6 5,139,295 + Echvi_4297 0.47 +0.8 5,139,295 + Echvi_4297 0.47 -0.0 5,139,296 - Echvi_4297 0.48 -0.2 5,139,401 + Echvi_4297 0.60 -0.1 5,139,431 + Echvi_4297 0.63 -0.2 5,139,431 + Echvi_4297 0.63 -0.1 5,139,431 + Echvi_4297 0.63 -0.4 5,139,432 - Echvi_4297 0.64 +1.5 5,139,432 - Echvi_4297 0.64 +0.6 5,139,432 - Echvi_4297 0.64 -1.3 5,139,446 + Echvi_4297 0.65 -0.9 5,139,447 - Echvi_4297 0.65 -1.2 5,139,447 - Echvi_4297 0.65 -0.1 5,139,537 + Echvi_4297 0.76 +0.4 5,139,563 - Echvi_4297 0.79 -0.7 5,139,627 + Echvi_4297 0.87 +1.9 5,139,630 - Echvi_4297 0.87 +0.0 5,139,643 + Echvi_4297 0.89 +0.5 5,139,663 - -1.0
Or see this region's nucleotide sequence