Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3755

Experiment: L-Glutamic (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_3754 and Echvi_3755 are separated by 528 nucleotidesEchvi_3755 and Echvi_3756 are separated by 157 nucleotidesEchvi_3756 and Echvi_3757 overlap by 4 nucleotides Echvi_3754: Echvi_3754 - Signal transduction histidine kinase, at 4,475,946 to 4,480,106 _3754 Echvi_3755: Echvi_3755 - Outer membrane cobalamin receptor protein, at 4,480,635 to 4,482,542 _3755 Echvi_3756: Echvi_3756 - hypothetical protein, at 4,482,700 to 4,483,056 _3756 Echvi_3757: Echvi_3757 - Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase, at 4,483,053 to 4,483,562 _3757 Position (kb) 4480 4481 4482 4483Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4479.655 kb on + strand, within Echvi_3754at 4479.655 kb on + strand, within Echvi_3754at 4479.669 kb on + strand, within Echvi_3754at 4479.669 kb on + strand, within Echvi_3754at 4479.670 kb on - strand, within Echvi_3754at 4479.670 kb on - strand, within Echvi_3754at 4479.671 kb on + strand, within Echvi_3754at 4479.671 kb on + strand, within Echvi_3754at 4479.672 kb on - strand, within Echvi_3754at 4479.678 kb on + strand, within Echvi_3754at 4479.679 kb on - strand, within Echvi_3754at 4479.700 kb on + strandat 4479.700 kb on + strandat 4479.701 kb on - strandat 4479.742 kb on + strandat 4479.742 kb on + strandat 4479.742 kb on + strandat 4479.743 kb on - strandat 4479.743 kb on - strandat 4479.744 kb on + strandat 4479.744 kb on + strandat 4479.745 kb on - strandat 4479.745 kb on - strandat 4479.745 kb on - strandat 4479.745 kb on - strandat 4479.745 kb on - strandat 4479.880 kb on + strandat 4479.934 kb on + strandat 4479.934 kb on + strandat 4479.934 kb on + strandat 4479.935 kb on - strandat 4479.935 kb on - strandat 4479.935 kb on - strandat 4479.935 kb on - strandat 4479.935 kb on - strandat 4479.937 kb on - strandat 4479.950 kb on + strandat 4479.978 kb on - strandat 4480.035 kb on + strandat 4480.049 kb on - strandat 4480.062 kb on - strandat 4480.109 kb on + strandat 4480.109 kb on + strandat 4480.110 kb on - strandat 4480.110 kb on - strandat 4480.121 kb on + strandat 4480.135 kb on + strandat 4480.226 kb on + strandat 4480.227 kb on - strandat 4480.279 kb on + strandat 4480.288 kb on + strandat 4480.303 kb on + strandat 4480.303 kb on + strandat 4480.304 kb on - strandat 4480.347 kb on - strandat 4480.438 kb on + strandat 4480.439 kb on - strandat 4480.446 kb on + strandat 4480.580 kb on + strandat 4480.613 kb on + strandat 4480.613 kb on + strandat 4480.614 kb on - strandat 4480.626 kb on - strandat 4480.634 kb on + strandat 4480.635 kb on - strandat 4480.652 kb on + strandat 4480.652 kb on + strandat 4480.652 kb on + strandat 4480.653 kb on - strandat 4480.653 kb on - strandat 4480.653 kb on - strandat 4480.701 kb on - strandat 4480.810 kb on - strandat 4480.864 kb on + strand, within Echvi_3755at 4480.867 kb on + strandat 4480.868 kb on - strand, within Echvi_3755at 4481.024 kb on - strand, within Echvi_3755at 4481.030 kb on - strand, within Echvi_3755at 4481.063 kb on - strand, within Echvi_3755at 4481.088 kb on + strand, within Echvi_3755at 4481.089 kb on - strand, within Echvi_3755at 4481.189 kb on + strand, within Echvi_3755at 4481.190 kb on - strand, within Echvi_3755at 4481.238 kb on - strand, within Echvi_3755at 4481.242 kb on - strand, within Echvi_3755at 4481.260 kb on + strand, within Echvi_3755at 4481.260 kb on + strand, within Echvi_3755at 4481.260 kb on + strand, within Echvi_3755at 4481.260 kb on + strand, within Echvi_3755at 4481.260 kb on + strand, within Echvi_3755at 4481.261 kb on - strand, within Echvi_3755at 4481.261 kb on - strand, within Echvi_3755at 4481.261 kb on - strand, within Echvi_3755at 4481.261 kb on - strand, within Echvi_3755at 4481.261 kb on - strand, within Echvi_3755at 4481.262 kb on + strand, within Echvi_3755at 4481.263 kb on - strand, within Echvi_3755at 4481.263 kb on - strand, within Echvi_3755at 4481.425 kb on - strand, within Echvi_3755at 4481.495 kb on + strand, within Echvi_3755at 4481.496 kb on - strand, within Echvi_3755at 4481.499 kb on + strand, within Echvi_3755at 4481.499 kb on + strand, within Echvi_3755at 4481.501 kb on + strand, within Echvi_3755at 4481.501 kb on + strand, within Echvi_3755at 4481.501 kb on + strand, within Echvi_3755at 4481.501 kb on + strand, within Echvi_3755at 4481.502 kb on - strand, within Echvi_3755at 4481.502 kb on - strand, within Echvi_3755at 4481.506 kb on - strand, within Echvi_3755at 4481.528 kb on + strand, within Echvi_3755at 4481.529 kb on - strand, within Echvi_3755at 4481.538 kb on + strand, within Echvi_3755at 4481.539 kb on - strand, within Echvi_3755at 4481.540 kb on + strand, within Echvi_3755at 4481.540 kb on + strand, within Echvi_3755at 4481.541 kb on - strand, within Echvi_3755at 4481.541 kb on - strand, within Echvi_3755at 4481.581 kb on + strand, within Echvi_3755at 4481.581 kb on + strand, within Echvi_3755at 4481.581 kb on + strand, within Echvi_3755at 4481.581 kb on + strand, within Echvi_3755at 4481.582 kb on - strand, within Echvi_3755at 4481.582 kb on - strand, within Echvi_3755at 4481.582 kb on - strand, within Echvi_3755at 4481.583 kb on + strand, within Echvi_3755at 4481.583 kb on + strand, within Echvi_3755at 4481.583 kb on + strand, within Echvi_3755at 4481.584 kb on - strand, within Echvi_3755at 4481.584 kb on - strand, within Echvi_3755at 4481.584 kb on - strand, within Echvi_3755at 4481.599 kb on + strand, within Echvi_3755at 4481.600 kb on - strand, within Echvi_3755at 4481.600 kb on - strand, within Echvi_3755at 4481.659 kb on + strand, within Echvi_3755at 4481.660 kb on - strand, within Echvi_3755at 4481.679 kb on + strand, within Echvi_3755at 4481.805 kb on - strand, within Echvi_3755at 4481.811 kb on + strand, within Echvi_3755at 4481.812 kb on - strand, within Echvi_3755at 4481.829 kb on + strand, within Echvi_3755at 4481.829 kb on + strand, within Echvi_3755at 4481.829 kb on + strand, within Echvi_3755at 4481.829 kb on + strand, within Echvi_3755at 4481.830 kb on - strand, within Echvi_3755at 4481.832 kb on - strand, within Echvi_3755at 4481.832 kb on - strand, within Echvi_3755at 4481.837 kb on - strand, within Echvi_3755at 4481.907 kb on + strand, within Echvi_3755at 4481.907 kb on + strand, within Echvi_3755at 4481.907 kb on + strand, within Echvi_3755at 4481.908 kb on - strand, within Echvi_3755at 4481.908 kb on - strand, within Echvi_3755at 4481.908 kb on - strand, within Echvi_3755at 4481.947 kb on - strand, within Echvi_3755at 4482.006 kb on + strand, within Echvi_3755at 4482.006 kb on + strand, within Echvi_3755at 4482.007 kb on - strand, within Echvi_3755at 4482.007 kb on - strand, within Echvi_3755at 4482.007 kb on - strand, within Echvi_3755at 4482.007 kb on - strand, within Echvi_3755at 4482.008 kb on + strand, within Echvi_3755at 4482.008 kb on + strand, within Echvi_3755at 4482.009 kb on - strand, within Echvi_3755at 4482.009 kb on - strand, within Echvi_3755at 4482.011 kb on - strand, within Echvi_3755at 4482.011 kb on - strand, within Echvi_3755at 4482.083 kb on - strand, within Echvi_3755at 4482.102 kb on + strand, within Echvi_3755at 4482.103 kb on - strand, within Echvi_3755at 4482.104 kb on + strand, within Echvi_3755at 4482.104 kb on + strand, within Echvi_3755at 4482.104 kb on + strand, within Echvi_3755at 4482.186 kb on + strand, within Echvi_3755at 4482.345 kb on + strand, within Echvi_3755at 4482.346 kb on - strand, within Echvi_3755at 4482.352 kb on - strandat 4482.358 kb on + strandat 4482.385 kb on - strandat 4482.421 kb on + strandat 4482.422 kb on - strandat 4482.441 kb on + strandat 4482.455 kb on + strandat 4482.477 kb on - strandat 4482.486 kb on + strandat 4482.486 kb on + strandat 4482.487 kb on - strandat 4482.494 kb on + strandat 4482.495 kb on - strandat 4482.516 kb on - strandat 4482.682 kb on + strandat 4482.682 kb on + strandat 4482.682 kb on + strandat 4482.780 kb on + strand, within Echvi_3756at 4482.828 kb on - strand, within Echvi_3756at 4482.839 kb on + strand, within Echvi_3756at 4482.840 kb on - strand, within Echvi_3756at 4482.940 kb on + strand, within Echvi_3756at 4482.969 kb on - strand, within Echvi_3756at 4482.983 kb on - strand, within Echvi_3756at 4482.983 kb on - strand, within Echvi_3756at 4482.983 kb on - strand, within Echvi_3756at 4482.983 kb on - strand, within Echvi_3756at 4482.983 kb on - strand, within Echvi_3756at 4482.983 kb on - strand, within Echvi_3756at 4483.062 kb on + strandat 4483.062 kb on + strandat 4483.062 kb on + strandat 4483.063 kb on - strandat 4483.098 kb on + strandat 4483.141 kb on - strand, within Echvi_3757at 4483.255 kb on + strand, within Echvi_3757at 4483.305 kb on - strand, within Echvi_3757at 4483.325 kb on + strand, within Echvi_3757at 4483.326 kb on - strand, within Echvi_3757at 4483.378 kb on + strand, within Echvi_3757at 4483.378 kb on + strand, within Echvi_3757at 4483.497 kb on + strand, within Echvi_3757at 4483.498 kb on - strand, within Echvi_3757

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
remove
4,479,655 + Echvi_3754 0.89 -0.7
4,479,655 + Echvi_3754 0.89 +1.2
4,479,669 + Echvi_3754 0.89 -0.8
4,479,669 + Echvi_3754 0.89 +0.7
4,479,670 - Echvi_3754 0.89 +0.2
4,479,670 - Echvi_3754 0.89 -0.2
4,479,671 + Echvi_3754 0.90 -0.1
4,479,671 + Echvi_3754 0.90 +0.1
4,479,672 - Echvi_3754 0.90 -2.3
4,479,678 + Echvi_3754 0.90 +0.7
4,479,679 - Echvi_3754 0.90 -0.2
4,479,700 + +0.3
4,479,700 + -1.3
4,479,701 - +1.3
4,479,742 + +3.4
4,479,742 + -0.3
4,479,742 + +0.0
4,479,743 - +0.1
4,479,743 - -0.9
4,479,744 + -0.3
4,479,744 + -0.8
4,479,745 - +0.5
4,479,745 - +0.1
4,479,745 - -1.2
4,479,745 - -0.6
4,479,745 - +0.1
4,479,880 + -0.2
4,479,934 + -0.0
4,479,934 + +0.8
4,479,934 + -0.0
4,479,935 - -0.4
4,479,935 - -0.2
4,479,935 - -0.4
4,479,935 - -0.1
4,479,935 - -0.6
4,479,937 - -0.3
4,479,950 + -0.1
4,479,978 - +0.3
4,480,035 + -0.1
4,480,049 - +2.0
4,480,062 - -1.6
4,480,109 + +1.7
4,480,109 + -2.0
4,480,110 - +0.6
4,480,110 - -0.4
4,480,121 + +0.3
4,480,135 + -0.3
4,480,226 + +0.2
4,480,227 - +0.8
4,480,279 + +0.5
4,480,288 + +0.7
4,480,303 + +0.4
4,480,303 + +0.1
4,480,304 - -0.0
4,480,347 - +0.3
4,480,438 + -0.8
4,480,439 - +0.7
4,480,446 + -1.7
4,480,580 + -1.0
4,480,613 + -2.2
4,480,613 + -0.2
4,480,614 - -0.2
4,480,626 - +0.7
4,480,634 + -0.9
4,480,635 - -1.5
4,480,652 + -0.2
4,480,652 + +0.8
4,480,652 + -0.2
4,480,653 - -0.8
4,480,653 - -0.9
4,480,653 - +0.6
4,480,701 - -1.1
4,480,810 - +0.5
4,480,864 + Echvi_3755 0.12 -0.1
4,480,867 + -0.5
4,480,868 - Echvi_3755 0.12 -0.4
4,481,024 - Echvi_3755 0.20 +0.1
4,481,030 - Echvi_3755 0.21 -0.9
4,481,063 - Echvi_3755 0.22 -0.2
4,481,088 + Echvi_3755 0.24 -1.5
4,481,089 - Echvi_3755 0.24 -1.2
4,481,189 + Echvi_3755 0.29 -0.7
4,481,190 - Echvi_3755 0.29 +0.8
4,481,238 - Echvi_3755 0.32 -1.1
4,481,242 - Echvi_3755 0.32 -0.5
4,481,260 + Echvi_3755 0.33 +0.1
4,481,260 + Echvi_3755 0.33 +0.1
4,481,260 + Echvi_3755 0.33 +0.7
4,481,260 + Echvi_3755 0.33 -1.2
4,481,260 + Echvi_3755 0.33 +1.3
4,481,261 - Echvi_3755 0.33 -1.2
4,481,261 - Echvi_3755 0.33 +0.8
4,481,261 - Echvi_3755 0.33 -1.2
4,481,261 - Echvi_3755 0.33 +0.1
4,481,261 - Echvi_3755 0.33 -2.1
4,481,262 + Echvi_3755 0.33 -0.6
4,481,263 - Echvi_3755 0.33 -1.0
4,481,263 - Echvi_3755 0.33 -0.4
4,481,425 - Echvi_3755 0.41 -0.2
4,481,495 + Echvi_3755 0.45 -0.5
4,481,496 - Echvi_3755 0.45 -0.2
4,481,499 + Echvi_3755 0.45 -1.0
4,481,499 + Echvi_3755 0.45 -0.5
4,481,501 + Echvi_3755 0.45 -0.1
4,481,501 + Echvi_3755 0.45 +0.4
4,481,501 + Echvi_3755 0.45 +0.5
4,481,501 + Echvi_3755 0.45 -0.5
4,481,502 - Echvi_3755 0.45 -0.0
4,481,502 - Echvi_3755 0.45 -0.1
4,481,506 - Echvi_3755 0.46 -0.0
4,481,528 + Echvi_3755 0.47 -1.1
4,481,529 - Echvi_3755 0.47 -1.4
4,481,538 + Echvi_3755 0.47 +1.4
4,481,539 - Echvi_3755 0.47 -1.1
4,481,540 + Echvi_3755 0.47 -0.6
4,481,540 + Echvi_3755 0.47 -0.0
4,481,541 - Echvi_3755 0.47 -1.3
4,481,541 - Echvi_3755 0.47 -0.5
4,481,581 + Echvi_3755 0.50 -1.9
4,481,581 + Echvi_3755 0.50 -1.3
4,481,581 + Echvi_3755 0.50 -1.0
4,481,581 + Echvi_3755 0.50 -0.9
4,481,582 - Echvi_3755 0.50 -1.8
4,481,582 - Echvi_3755 0.50 -1.2
4,481,582 - Echvi_3755 0.50 -2.1
4,481,583 + Echvi_3755 0.50 -1.1
4,481,583 + Echvi_3755 0.50 -1.0
4,481,583 + Echvi_3755 0.50 -1.0
4,481,584 - Echvi_3755 0.50 -0.5
4,481,584 - Echvi_3755 0.50 -1.7
4,481,584 - Echvi_3755 0.50 -1.0
4,481,599 + Echvi_3755 0.51 -0.7
4,481,600 - Echvi_3755 0.51 -2.1
4,481,600 - Echvi_3755 0.51 -1.2
4,481,659 + Echvi_3755 0.54 -1.4
4,481,660 - Echvi_3755 0.54 -1.6
4,481,679 + Echvi_3755 0.55 -1.6
4,481,805 - Echvi_3755 0.61 -0.8
4,481,811 + Echvi_3755 0.62 -0.4
4,481,812 - Echvi_3755 0.62 -1.0
4,481,829 + Echvi_3755 0.63 -1.4
4,481,829 + Echvi_3755 0.63 +0.3
4,481,829 + Echvi_3755 0.63 -1.5
4,481,829 + Echvi_3755 0.63 -1.2
4,481,830 - Echvi_3755 0.63 -0.2
4,481,832 - Echvi_3755 0.63 +0.5
4,481,832 - Echvi_3755 0.63 +0.7
4,481,837 - Echvi_3755 0.63 -0.7
4,481,907 + Echvi_3755 0.67 -1.9
4,481,907 + Echvi_3755 0.67 +1.8
4,481,907 + Echvi_3755 0.67 -0.2
4,481,908 - Echvi_3755 0.67 -1.2
4,481,908 - Echvi_3755 0.67 -0.4
4,481,908 - Echvi_3755 0.67 -1.7
4,481,947 - Echvi_3755 0.69 -0.9
4,482,006 + Echvi_3755 0.72 +0.1
4,482,006 + Echvi_3755 0.72 -0.3
4,482,007 - Echvi_3755 0.72 +0.3
4,482,007 - Echvi_3755 0.72 +0.4
4,482,007 - Echvi_3755 0.72 -0.7
4,482,007 - Echvi_3755 0.72 +2.4
4,482,008 + Echvi_3755 0.72 +0.1
4,482,008 + Echvi_3755 0.72 +0.5
4,482,009 - Echvi_3755 0.72 -1.5
4,482,009 - Echvi_3755 0.72 -2.7
4,482,011 - Echvi_3755 0.72 -0.1
4,482,011 - Echvi_3755 0.72 -1.2
4,482,083 - Echvi_3755 0.76 +0.2
4,482,102 + Echvi_3755 0.77 -1.6
4,482,103 - Echvi_3755 0.77 +0.1
4,482,104 + Echvi_3755 0.77 -0.8
4,482,104 + Echvi_3755 0.77 -0.5
4,482,104 + Echvi_3755 0.77 +0.0
4,482,186 + Echvi_3755 0.81 -0.3
4,482,345 + Echvi_3755 0.90 -1.2
4,482,346 - Echvi_3755 0.90 -1.1
4,482,352 - -0.5
4,482,358 + -0.5
4,482,385 - +1.0
4,482,421 + -1.5
4,482,422 - -1.4
4,482,441 + +0.0
4,482,455 + -1.6
4,482,477 - -0.1
4,482,486 + +0.0
4,482,486 + +0.5
4,482,487 - -1.8
4,482,494 + +0.6
4,482,495 - -1.6
4,482,516 - -1.2
4,482,682 + +0.4
4,482,682 + +0.1
4,482,682 + -0.5
4,482,780 + Echvi_3756 0.22 -0.5
4,482,828 - Echvi_3756 0.36 +0.2
4,482,839 + Echvi_3756 0.39 -1.3
4,482,840 - Echvi_3756 0.39 +0.8
4,482,940 + Echvi_3756 0.67 -1.7
4,482,969 - Echvi_3756 0.75 -0.7
4,482,983 - Echvi_3756 0.79 +0.4
4,482,983 - Echvi_3756 0.79 -0.4
4,482,983 - Echvi_3756 0.79 +0.2
4,482,983 - Echvi_3756 0.79 -0.7
4,482,983 - Echvi_3756 0.79 -0.3
4,482,983 - Echvi_3756 0.79 -0.0
4,483,062 + +0.8
4,483,062 + -0.1
4,483,062 + -1.3
4,483,063 - -0.8
4,483,098 + +1.5
4,483,141 - Echvi_3757 0.17 -0.4
4,483,255 + Echvi_3757 0.40 -0.8
4,483,305 - Echvi_3757 0.49 -0.7
4,483,325 + Echvi_3757 0.53 +0.7
4,483,326 - Echvi_3757 0.54 -1.0
4,483,378 + Echvi_3757 0.64 -0.1
4,483,378 + Echvi_3757 0.64 -0.2
4,483,497 + Echvi_3757 0.87 +0.2
4,483,498 - Echvi_3757 0.87 -0.5

Or see this region's nucleotide sequence