Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2991

Experiment: L-Glutamic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2990 and Echvi_2991 are separated by 129 nucleotidesEchvi_2991 and Echvi_2992 are separated by 250 nucleotides Echvi_2990: Echvi_2990 - Acyl-CoA dehydrogenases, at 3,573,447 to 3,574,655 _2990 Echvi_2991: Echvi_2991 - Tryptophan 2,3-dioxygenase (vermilion), at 3,574,785 to 3,575,759 _2991 Echvi_2992: Echvi_2992 - Uncharacterized FAD-dependent dehydrogenases, at 3,576,010 to 3,577,593 _2992 Position (kb) 3574 3575 3576Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3573.829 kb on + strand, within Echvi_2990at 3573.830 kb on - strand, within Echvi_2990at 3573.998 kb on + strand, within Echvi_2990at 3573.999 kb on - strand, within Echvi_2990at 3573.999 kb on - strand, within Echvi_2990at 3573.999 kb on - strand, within Echvi_2990at 3574.020 kb on - strand, within Echvi_2990at 3574.046 kb on + strand, within Echvi_2990at 3574.047 kb on - strand, within Echvi_2990at 3574.047 kb on - strand, within Echvi_2990at 3574.047 kb on - strand, within Echvi_2990at 3574.083 kb on + strand, within Echvi_2990at 3574.083 kb on + strand, within Echvi_2990at 3574.087 kb on - strand, within Echvi_2990at 3574.087 kb on - strand, within Echvi_2990at 3574.093 kb on - strand, within Echvi_2990at 3574.093 kb on - strand, within Echvi_2990at 3574.112 kb on + strand, within Echvi_2990at 3574.137 kb on + strand, within Echvi_2990at 3574.138 kb on - strand, within Echvi_2990at 3574.141 kb on - strand, within Echvi_2990at 3574.144 kb on + strand, within Echvi_2990at 3574.388 kb on + strand, within Echvi_2990at 3574.388 kb on + strand, within Echvi_2990at 3574.389 kb on - strand, within Echvi_2990at 3574.389 kb on - strand, within Echvi_2990at 3574.389 kb on - strand, within Echvi_2990at 3574.390 kb on + strand, within Echvi_2990at 3574.391 kb on - strand, within Echvi_2990at 3574.412 kb on - strand, within Echvi_2990at 3574.412 kb on - strand, within Echvi_2990at 3574.507 kb on + strand, within Echvi_2990at 3574.507 kb on + strand, within Echvi_2990at 3574.508 kb on - strand, within Echvi_2990at 3574.557 kb on + strandat 3574.656 kb on - strandat 3574.657 kb on + strandat 3574.658 kb on - strandat 3574.658 kb on - strandat 3574.699 kb on - strandat 3574.700 kb on + strandat 3574.720 kb on + strandat 3574.734 kb on + strandat 3574.780 kb on + strandat 3574.805 kb on + strandat 3574.834 kb on + strandat 3574.834 kb on + strandat 3574.835 kb on - strandat 3574.835 kb on - strandat 3574.846 kb on - strandat 3574.846 kb on - strandat 3574.848 kb on - strandat 3574.894 kb on - strand, within Echvi_2991at 3574.906 kb on + strand, within Echvi_2991at 3574.907 kb on - strand, within Echvi_2991at 3574.911 kb on + strand, within Echvi_2991at 3574.912 kb on - strand, within Echvi_2991at 3574.912 kb on - strand, within Echvi_2991at 3574.920 kb on + strand, within Echvi_2991at 3574.920 kb on + strand, within Echvi_2991at 3574.921 kb on - strand, within Echvi_2991at 3574.921 kb on - strand, within Echvi_2991at 3574.921 kb on - strand, within Echvi_2991at 3574.922 kb on + strand, within Echvi_2991at 3574.923 kb on - strand, within Echvi_2991at 3574.970 kb on + strand, within Echvi_2991at 3575.032 kb on + strand, within Echvi_2991at 3575.033 kb on - strand, within Echvi_2991at 3575.068 kb on + strand, within Echvi_2991at 3575.069 kb on - strand, within Echvi_2991at 3575.069 kb on - strand, within Echvi_2991at 3575.069 kb on - strand, within Echvi_2991at 3575.183 kb on + strand, within Echvi_2991at 3575.304 kb on - strand, within Echvi_2991at 3575.470 kb on + strand, within Echvi_2991at 3575.470 kb on + strand, within Echvi_2991at 3575.544 kb on + strand, within Echvi_2991at 3575.545 kb on - strand, within Echvi_2991at 3575.565 kb on - strand, within Echvi_2991at 3575.576 kb on + strand, within Echvi_2991at 3575.580 kb on + strand, within Echvi_2991at 3575.580 kb on + strand, within Echvi_2991at 3575.580 kb on + strand, within Echvi_2991at 3575.581 kb on - strand, within Echvi_2991at 3575.581 kb on - strand, within Echvi_2991at 3575.588 kb on + strand, within Echvi_2991at 3575.637 kb on + strand, within Echvi_2991at 3575.638 kb on - strand, within Echvi_2991at 3575.671 kb on - strandat 3575.783 kb on + strandat 3575.783 kb on + strandat 3575.783 kb on + strandat 3575.784 kb on - strandat 3575.784 kb on - strandat 3575.788 kb on - strandat 3575.789 kb on + strandat 3575.789 kb on + strandat 3575.790 kb on - strandat 3575.790 kb on - strandat 3575.805 kb on - strandat 3575.805 kb on - strandat 3575.815 kb on + strandat 3575.815 kb on + strandat 3575.816 kb on - strandat 3575.816 kb on - strandat 3575.816 kb on - strandat 3575.829 kb on + strandat 3575.830 kb on - strandat 3575.850 kb on - strandat 3575.964 kb on - strandat 3575.977 kb on + strandat 3575.977 kb on + strandat 3575.977 kb on + strandat 3575.977 kb on + strandat 3575.978 kb on - strandat 3575.978 kb on - strandat 3575.978 kb on - strandat 3575.978 kb on - strandat 3575.978 kb on - strandat 3575.978 kb on - strandat 3575.978 kb on - strandat 3575.978 kb on - strandat 3575.990 kb on + strandat 3575.999 kb on + strandat 3575.999 kb on + strandat 3576.000 kb on - strandat 3576.030 kb on + strandat 3576.030 kb on + strandat 3576.030 kb on + strandat 3576.030 kb on + strandat 3576.031 kb on - strandat 3576.031 kb on - strandat 3576.031 kb on - strandat 3576.031 kb on - strandat 3576.075 kb on + strandat 3576.075 kb on + strandat 3576.076 kb on - strandat 3576.092 kb on + strandat 3576.093 kb on - strandat 3576.114 kb on + strandat 3576.146 kb on + strandat 3576.146 kb on + strandat 3576.146 kb on + strandat 3576.147 kb on - strandat 3576.147 kb on - strandat 3576.147 kb on - strandat 3576.147 kb on - strandat 3576.180 kb on + strand, within Echvi_2992at 3576.223 kb on - strand, within Echvi_2992at 3576.223 kb on - strand, within Echvi_2992at 3576.253 kb on - strand, within Echvi_2992at 3576.362 kb on + strand, within Echvi_2992at 3576.362 kb on + strand, within Echvi_2992at 3576.362 kb on + strand, within Echvi_2992at 3576.362 kb on + strand, within Echvi_2992at 3576.363 kb on - strand, within Echvi_2992at 3576.366 kb on + strand, within Echvi_2992at 3576.394 kb on - strand, within Echvi_2992at 3576.394 kb on - strand, within Echvi_2992at 3576.410 kb on + strand, within Echvi_2992at 3576.453 kb on + strand, within Echvi_2992at 3576.453 kb on + strand, within Echvi_2992at 3576.454 kb on - strand, within Echvi_2992at 3576.457 kb on + strand, within Echvi_2992at 3576.476 kb on - strand, within Echvi_2992at 3576.504 kb on - strand, within Echvi_2992at 3576.549 kb on + strand, within Echvi_2992at 3576.549 kb on + strand, within Echvi_2992at 3576.550 kb on - strand, within Echvi_2992at 3576.550 kb on - strand, within Echvi_2992at 3576.551 kb on + strand, within Echvi_2992at 3576.580 kb on - strand, within Echvi_2992at 3576.580 kb on - strand, within Echvi_2992at 3576.603 kb on - strand, within Echvi_2992at 3576.606 kb on + strand, within Echvi_2992at 3576.606 kb on + strand, within Echvi_2992at 3576.607 kb on - strand, within Echvi_2992at 3576.607 kb on - strand, within Echvi_2992at 3576.607 kb on - strand, within Echvi_2992at 3576.663 kb on + strand, within Echvi_2992

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
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3,573,829 + Echvi_2990 0.32 -0.6
3,573,830 - Echvi_2990 0.32 +0.0
3,573,998 + Echvi_2990 0.46 -1.2
3,573,999 - Echvi_2990 0.46 -0.4
3,573,999 - Echvi_2990 0.46 -0.5
3,573,999 - Echvi_2990 0.46 -0.9
3,574,020 - Echvi_2990 0.47 +0.1
3,574,046 + Echvi_2990 0.50 +0.3
3,574,047 - Echvi_2990 0.50 +0.3
3,574,047 - Echvi_2990 0.50 -0.1
3,574,047 - Echvi_2990 0.50 +3.2
3,574,083 + Echvi_2990 0.53 +0.3
3,574,083 + Echvi_2990 0.53 -0.7
3,574,087 - Echvi_2990 0.53 +1.0
3,574,087 - Echvi_2990 0.53 -0.7
3,574,093 - Echvi_2990 0.53 -0.8
3,574,093 - Echvi_2990 0.53 -0.5
3,574,112 + Echvi_2990 0.55 +0.7
3,574,137 + Echvi_2990 0.57 -0.4
3,574,138 - Echvi_2990 0.57 +0.3
3,574,141 - Echvi_2990 0.57 +0.2
3,574,144 + Echvi_2990 0.58 -0.7
3,574,388 + Echvi_2990 0.78 +0.1
3,574,388 + Echvi_2990 0.78 -0.2
3,574,389 - Echvi_2990 0.78 +1.5
3,574,389 - Echvi_2990 0.78 +0.7
3,574,389 - Echvi_2990 0.78 +1.3
3,574,390 + Echvi_2990 0.78 +1.3
3,574,391 - Echvi_2990 0.78 -0.8
3,574,412 - Echvi_2990 0.80 -0.3
3,574,412 - Echvi_2990 0.80 -1.5
3,574,507 + Echvi_2990 0.88 -0.2
3,574,507 + Echvi_2990 0.88 -1.0
3,574,508 - Echvi_2990 0.88 +0.4
3,574,557 + -0.8
3,574,656 - +0.8
3,574,657 + -0.5
3,574,658 - +0.2
3,574,658 - +0.7
3,574,699 - -0.3
3,574,700 + +0.3
3,574,720 + +0.4
3,574,734 + -0.1
3,574,780 + +0.2
3,574,805 + -1.3
3,574,834 + -1.6
3,574,834 + -1.1
3,574,835 - -1.6
3,574,835 - -0.5
3,574,846 - -2.6
3,574,846 - -1.1
3,574,848 - -1.2
3,574,894 - Echvi_2991 0.11 -0.7
3,574,906 + Echvi_2991 0.12 -1.2
3,574,907 - Echvi_2991 0.13 -0.2
3,574,911 + Echvi_2991 0.13 -1.0
3,574,912 - Echvi_2991 0.13 -1.3
3,574,912 - Echvi_2991 0.13 -1.0
3,574,920 + Echvi_2991 0.14 +0.1
3,574,920 + Echvi_2991 0.14 -1.2
3,574,921 - Echvi_2991 0.14 -0.7
3,574,921 - Echvi_2991 0.14 -0.9
3,574,921 - Echvi_2991 0.14 -0.2
3,574,922 + Echvi_2991 0.14 +1.8
3,574,923 - Echvi_2991 0.14 -0.8
3,574,970 + Echvi_2991 0.19 -0.3
3,575,032 + Echvi_2991 0.25 -0.7
3,575,033 - Echvi_2991 0.25 -0.8
3,575,068 + Echvi_2991 0.29 -1.3
3,575,069 - Echvi_2991 0.29 +0.1
3,575,069 - Echvi_2991 0.29 +0.3
3,575,069 - Echvi_2991 0.29 -1.5
3,575,183 + Echvi_2991 0.41 -2.9
3,575,304 - Echvi_2991 0.53 -1.2
3,575,470 + Echvi_2991 0.70 -0.9
3,575,470 + Echvi_2991 0.70 +0.0
3,575,544 + Echvi_2991 0.78 -1.6
3,575,545 - Echvi_2991 0.78 -1.2
3,575,565 - Echvi_2991 0.80 -0.9
3,575,576 + Echvi_2991 0.81 -0.7
3,575,580 + Echvi_2991 0.82 +0.3
3,575,580 + Echvi_2991 0.82 -0.5
3,575,580 + Echvi_2991 0.82 -0.5
3,575,581 - Echvi_2991 0.82 -0.3
3,575,581 - Echvi_2991 0.82 -0.0
3,575,588 + Echvi_2991 0.82 -1.3
3,575,637 + Echvi_2991 0.87 -2.1
3,575,638 - Echvi_2991 0.87 +0.1
3,575,671 - -1.0
3,575,783 + -1.1
3,575,783 + +0.1
3,575,783 + -1.3
3,575,784 - +1.0
3,575,784 - +0.6
3,575,788 - +0.0
3,575,789 + +1.0
3,575,789 + -1.3
3,575,790 - +0.3
3,575,790 - -1.4
3,575,805 - +0.4
3,575,805 - -1.7
3,575,815 + +0.5
3,575,815 + -0.6
3,575,816 - -0.7
3,575,816 - -1.6
3,575,816 - +0.7
3,575,829 + -0.8
3,575,830 - -2.1
3,575,850 - +0.4
3,575,964 - +0.1
3,575,977 + +0.7
3,575,977 + -0.3
3,575,977 + -0.0
3,575,977 + +1.1
3,575,978 - -0.0
3,575,978 - +0.0
3,575,978 - -1.0
3,575,978 - +1.3
3,575,978 - -0.1
3,575,978 - +0.8
3,575,978 - +0.5
3,575,978 - +0.3
3,575,990 + +0.2
3,575,999 + -0.2
3,575,999 + +0.7
3,576,000 - -1.7
3,576,030 + -2.1
3,576,030 + -0.5
3,576,030 + -0.9
3,576,030 + -2.4
3,576,031 - +0.1
3,576,031 - -0.0
3,576,031 - +0.5
3,576,031 - -1.3
3,576,075 + -0.2
3,576,075 + +2.3
3,576,076 - +0.7
3,576,092 + -0.3
3,576,093 - -1.1
3,576,114 + -0.1
3,576,146 + -0.7
3,576,146 + +0.3
3,576,146 + +0.3
3,576,147 - +0.8
3,576,147 - +1.1
3,576,147 - +0.1
3,576,147 - -0.0
3,576,180 + Echvi_2992 0.11 +0.1
3,576,223 - Echvi_2992 0.13 -0.7
3,576,223 - Echvi_2992 0.13 +0.5
3,576,253 - Echvi_2992 0.15 -1.9
3,576,362 + Echvi_2992 0.22 -0.3
3,576,362 + Echvi_2992 0.22 -1.2
3,576,362 + Echvi_2992 0.22 -0.3
3,576,362 + Echvi_2992 0.22 +1.8
3,576,363 - Echvi_2992 0.22 +0.4
3,576,366 + Echvi_2992 0.22 +0.2
3,576,394 - Echvi_2992 0.24 +0.4
3,576,394 - Echvi_2992 0.24 +0.0
3,576,410 + Echvi_2992 0.25 +0.6
3,576,453 + Echvi_2992 0.28 -1.6
3,576,453 + Echvi_2992 0.28 -0.7
3,576,454 - Echvi_2992 0.28 -0.5
3,576,457 + Echvi_2992 0.28 -0.3
3,576,476 - Echvi_2992 0.29 +0.6
3,576,504 - Echvi_2992 0.31 +0.3
3,576,549 + Echvi_2992 0.34 -0.0
3,576,549 + Echvi_2992 0.34 +0.1
3,576,550 - Echvi_2992 0.34 +1.0
3,576,550 - Echvi_2992 0.34 +1.9
3,576,551 + Echvi_2992 0.34 -1.6
3,576,580 - Echvi_2992 0.36 -0.8
3,576,580 - Echvi_2992 0.36 +0.5
3,576,603 - Echvi_2992 0.37 +0.1
3,576,606 + Echvi_2992 0.38 -0.4
3,576,606 + Echvi_2992 0.38 -2.0
3,576,607 - Echvi_2992 0.38 +0.3
3,576,607 - Echvi_2992 0.38 +0.2
3,576,607 - Echvi_2992 0.38 +0.3
3,576,663 + Echvi_2992 0.41 -3.0

Or see this region's nucleotide sequence