Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2915

Experiment: L-Glutamic (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_2914 and Echvi_2915 are separated by 118 nucleotidesEchvi_2915 and Echvi_2916 are separated by 50 nucleotides Echvi_2914: Echvi_2914 - putative nicotinate phosphoribosyltransferase, at 3,488,943 to 3,490,418 _2914 Echvi_2915: Echvi_2915 - Amidases related to nicotinamidase, at 3,490,537 to 3,491,154 _2915 Echvi_2916: Echvi_2916 - phenazine biosynthesis protein PhzF family, at 3,491,205 to 3,491,996 _2916 Position (kb) 3490 3491 3492Strain fitness (log2 ratio) -2 -1 0 1 2at 3490.411 kb on - strandat 3490.411 kb on - strandat 3490.411 kb on - strandat 3490.417 kb on - strandat 3490.417 kb on - strandat 3490.417 kb on - strandat 3490.422 kb on - strandat 3490.430 kb on - strandat 3490.492 kb on + strandat 3490.492 kb on + strandat 3490.820 kb on + strand, within Echvi_2915at 3490.871 kb on + strand, within Echvi_2915at 3490.872 kb on - strand, within Echvi_2915at 3490.880 kb on - strand, within Echvi_2915at 3490.944 kb on + strand, within Echvi_2915at 3490.947 kb on + strand, within Echvi_2915at 3490.960 kb on + strand, within Echvi_2915at 3490.960 kb on + strand, within Echvi_2915at 3490.966 kb on - strand, within Echvi_2915at 3490.966 kb on - strand, within Echvi_2915at 3490.992 kb on + strand, within Echvi_2915at 3490.993 kb on - strand, within Echvi_2915at 3491.036 kb on - strand, within Echvi_2915at 3491.065 kb on - strand, within Echvi_2915at 3491.070 kb on - strand, within Echvi_2915at 3491.084 kb on - strand, within Echvi_2915at 3491.084 kb on - strand, within Echvi_2915at 3491.084 kb on - strand, within Echvi_2915at 3491.166 kb on - strandat 3491.166 kb on - strandat 3491.184 kb on + strandat 3491.184 kb on + strandat 3491.184 kb on + strandat 3491.185 kb on - strandat 3491.186 kb on + strandat 3491.205 kb on - strandat 3491.205 kb on - strandat 3491.416 kb on + strand, within Echvi_2916at 3491.417 kb on - strand, within Echvi_2916at 3491.447 kb on + strand, within Echvi_2916at 3491.447 kb on + strand, within Echvi_2916at 3491.454 kb on + strand, within Echvi_2916at 3491.454 kb on + strand, within Echvi_2916at 3491.458 kb on + strand, within Echvi_2916at 3491.458 kb on + strand, within Echvi_2916at 3491.458 kb on + strand, within Echvi_2916at 3491.459 kb on - strand, within Echvi_2916at 3491.459 kb on - strand, within Echvi_2916at 3491.525 kb on + strand, within Echvi_2916at 3491.525 kb on + strand, within Echvi_2916at 3491.526 kb on - strand, within Echvi_2916at 3491.620 kb on + strand, within Echvi_2916at 3491.675 kb on + strand, within Echvi_2916at 3491.676 kb on - strand, within Echvi_2916at 3491.686 kb on - strand, within Echvi_2916at 3491.689 kb on + strand, within Echvi_2916at 3491.690 kb on - strand, within Echvi_2916at 3491.690 kb on - strand, within Echvi_2916at 3491.690 kb on - strand, within Echvi_2916at 3491.690 kb on - strand, within Echvi_2916at 3491.764 kb on - strand, within Echvi_2916at 3491.768 kb on + strand, within Echvi_2916at 3491.768 kb on + strand, within Echvi_2916at 3491.768 kb on + strand, within Echvi_2916at 3491.768 kb on + strand, within Echvi_2916at 3491.770 kb on + strand, within Echvi_2916at 3491.770 kb on + strand, within Echvi_2916at 3491.771 kb on - strand, within Echvi_2916at 3491.771 kb on - strand, within Echvi_2916at 3491.772 kb on + strand, within Echvi_2916at 3491.772 kb on + strand, within Echvi_2916at 3491.772 kb on + strand, within Echvi_2916at 3491.772 kb on + strand, within Echvi_2916at 3491.773 kb on - strand, within Echvi_2916at 3491.773 kb on - strand, within Echvi_2916at 3491.781 kb on + strand, within Echvi_2916at 3491.850 kb on + strand, within Echvi_2916at 3491.871 kb on - strand, within Echvi_2916at 3491.882 kb on - strand, within Echvi_2916at 3491.949 kb on - strandat 3491.949 kb on - strandat 3491.994 kb on + strandat 3491.997 kb on + strandat 3492.007 kb on + strandat 3492.039 kb on + strandat 3492.040 kb on - strandat 3492.059 kb on - strandat 3492.069 kb on + strandat 3492.145 kb on - strandat 3492.145 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
remove
3,490,411 - +0.1
3,490,411 - -0.5
3,490,411 - +1.4
3,490,417 - -0.6
3,490,417 - -0.3
3,490,417 - -1.7
3,490,422 - -1.7
3,490,430 - -0.5
3,490,492 + +0.5
3,490,492 + +1.4
3,490,820 + Echvi_2915 0.46 -1.2
3,490,871 + Echvi_2915 0.54 -0.6
3,490,872 - Echvi_2915 0.54 -0.3
3,490,880 - Echvi_2915 0.56 -0.0
3,490,944 + Echvi_2915 0.66 +2.1
3,490,947 + Echvi_2915 0.66 -0.9
3,490,960 + Echvi_2915 0.68 -0.2
3,490,960 + Echvi_2915 0.68 -1.1
3,490,966 - Echvi_2915 0.69 +0.5
3,490,966 - Echvi_2915 0.69 +0.0
3,490,992 + Echvi_2915 0.74 +0.3
3,490,993 - Echvi_2915 0.74 +0.3
3,491,036 - Echvi_2915 0.81 +0.4
3,491,065 - Echvi_2915 0.85 +0.4
3,491,070 - Echvi_2915 0.86 +0.2
3,491,084 - Echvi_2915 0.89 -0.5
3,491,084 - Echvi_2915 0.89 -0.8
3,491,084 - Echvi_2915 0.89 +0.3
3,491,166 - -0.8
3,491,166 - -0.1
3,491,184 + +1.5
3,491,184 + +0.8
3,491,184 + +0.4
3,491,185 - +0.2
3,491,186 + -0.8
3,491,205 - -0.5
3,491,205 - +0.3
3,491,416 + Echvi_2916 0.27 -0.7
3,491,417 - Echvi_2916 0.27 +0.8
3,491,447 + Echvi_2916 0.31 -0.0
3,491,447 + Echvi_2916 0.31 -0.7
3,491,454 + Echvi_2916 0.31 +1.3
3,491,454 + Echvi_2916 0.31 +0.2
3,491,458 + Echvi_2916 0.32 -0.5
3,491,458 + Echvi_2916 0.32 -0.4
3,491,458 + Echvi_2916 0.32 +0.8
3,491,459 - Echvi_2916 0.32 +0.0
3,491,459 - Echvi_2916 0.32 -0.2
3,491,525 + Echvi_2916 0.40 +0.6
3,491,525 + Echvi_2916 0.40 -0.2
3,491,526 - Echvi_2916 0.41 +0.1
3,491,620 + Echvi_2916 0.52 -1.5
3,491,675 + Echvi_2916 0.59 +1.3
3,491,676 - Echvi_2916 0.59 -0.0
3,491,686 - Echvi_2916 0.61 -0.0
3,491,689 + Echvi_2916 0.61 -0.4
3,491,690 - Echvi_2916 0.61 -0.1
3,491,690 - Echvi_2916 0.61 -2.4
3,491,690 - Echvi_2916 0.61 +0.2
3,491,690 - Echvi_2916 0.61 +1.3
3,491,764 - Echvi_2916 0.71 -0.8
3,491,768 + Echvi_2916 0.71 -0.2
3,491,768 + Echvi_2916 0.71 -0.7
3,491,768 + Echvi_2916 0.71 +0.2
3,491,768 + Echvi_2916 0.71 -0.2
3,491,770 + Echvi_2916 0.71 -0.2
3,491,770 + Echvi_2916 0.71 +0.0
3,491,771 - Echvi_2916 0.71 -1.1
3,491,771 - Echvi_2916 0.71 -0.8
3,491,772 + Echvi_2916 0.72 +0.2
3,491,772 + Echvi_2916 0.72 +0.1
3,491,772 + Echvi_2916 0.72 -0.2
3,491,772 + Echvi_2916 0.72 -0.4
3,491,773 - Echvi_2916 0.72 +0.2
3,491,773 - Echvi_2916 0.72 -0.5
3,491,781 + Echvi_2916 0.73 +0.2
3,491,850 + Echvi_2916 0.81 -0.2
3,491,871 - Echvi_2916 0.84 -1.9
3,491,882 - Echvi_2916 0.85 -1.0
3,491,949 - +0.4
3,491,949 - -0.7
3,491,994 + -0.2
3,491,997 + -0.2
3,492,007 + +1.3
3,492,039 + +0.2
3,492,040 - -0.1
3,492,059 - -0.4
3,492,069 + -0.2
3,492,145 - +0.0
3,492,145 - -0.7

Or see this region's nucleotide sequence