Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2914

Experiment: L-Glutamic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2912 and Echvi_2913 are separated by 156 nucleotidesEchvi_2913 and Echvi_2914 overlap by 4 nucleotidesEchvi_2914 and Echvi_2915 are separated by 118 nucleotidesEchvi_2915 and Echvi_2916 are separated by 50 nucleotides Echvi_2912: Echvi_2912 - Kef-type K+ transport systems, membrane components, at 3,486,682 to 3,487,983 _2912 Echvi_2913: Echvi_2913 - Predicted permeases, at 3,488,140 to 3,488,946 _2913 Echvi_2914: Echvi_2914 - putative nicotinate phosphoribosyltransferase, at 3,488,943 to 3,490,418 _2914 Echvi_2915: Echvi_2915 - Amidases related to nicotinamidase, at 3,490,537 to 3,491,154 _2915 Echvi_2916: Echvi_2916 - phenazine biosynthesis protein PhzF family, at 3,491,205 to 3,491,996 _2916 Position (kb) 3488 3489 3490 3491Strain fitness (log2 ratio) -1 0 1 2at 3487.953 kb on + strandat 3487.956 kb on + strandat 3487.956 kb on + strandat 3487.956 kb on + strandat 3487.956 kb on + strandat 3487.982 kb on - strandat 3488.051 kb on - strandat 3488.139 kb on + strandat 3488.139 kb on + strandat 3488.139 kb on + strandat 3488.140 kb on - strandat 3488.140 kb on - strandat 3488.145 kb on - strandat 3488.177 kb on + strandat 3488.178 kb on - strandat 3488.188 kb on + strandat 3488.188 kb on + strandat 3488.188 kb on + strandat 3488.188 kb on + strandat 3488.189 kb on - strandat 3488.402 kb on - strand, within Echvi_2913at 3488.436 kb on - strand, within Echvi_2913at 3488.474 kb on + strand, within Echvi_2913at 3488.477 kb on - strand, within Echvi_2913at 3488.502 kb on - strand, within Echvi_2913at 3488.511 kb on - strand, within Echvi_2913at 3488.543 kb on - strand, within Echvi_2913at 3488.543 kb on - strand, within Echvi_2913at 3488.587 kb on + strand, within Echvi_2913at 3488.588 kb on - strand, within Echvi_2913at 3488.592 kb on + strand, within Echvi_2913at 3488.592 kb on + strand, within Echvi_2913at 3488.593 kb on - strand, within Echvi_2913at 3488.670 kb on - strand, within Echvi_2913at 3488.684 kb on - strand, within Echvi_2913at 3488.684 kb on - strand, within Echvi_2913at 3488.689 kb on - strand, within Echvi_2913at 3488.761 kb on + strand, within Echvi_2913at 3488.762 kb on - strand, within Echvi_2913at 3488.762 kb on - strand, within Echvi_2913at 3488.814 kb on - strand, within Echvi_2913at 3488.833 kb on + strand, within Echvi_2913at 3488.834 kb on - strand, within Echvi_2913at 3488.834 kb on - strand, within Echvi_2913at 3488.888 kb on - strandat 3488.931 kb on + strandat 3488.931 kb on + strandat 3490.411 kb on - strandat 3490.411 kb on - strandat 3490.411 kb on - strandat 3490.417 kb on - strandat 3490.417 kb on - strandat 3490.417 kb on - strandat 3490.422 kb on - strandat 3490.430 kb on - strandat 3490.492 kb on + strandat 3490.492 kb on + strandat 3490.820 kb on + strand, within Echvi_2915at 3490.871 kb on + strand, within Echvi_2915at 3490.872 kb on - strand, within Echvi_2915at 3490.880 kb on - strand, within Echvi_2915at 3490.944 kb on + strand, within Echvi_2915at 3490.947 kb on + strand, within Echvi_2915at 3490.960 kb on + strand, within Echvi_2915at 3490.960 kb on + strand, within Echvi_2915at 3490.966 kb on - strand, within Echvi_2915at 3490.966 kb on - strand, within Echvi_2915at 3490.992 kb on + strand, within Echvi_2915at 3490.993 kb on - strand, within Echvi_2915at 3491.036 kb on - strand, within Echvi_2915at 3491.065 kb on - strand, within Echvi_2915at 3491.070 kb on - strand, within Echvi_2915at 3491.084 kb on - strand, within Echvi_2915at 3491.084 kb on - strand, within Echvi_2915at 3491.084 kb on - strand, within Echvi_2915at 3491.166 kb on - strandat 3491.166 kb on - strandat 3491.184 kb on + strandat 3491.184 kb on + strandat 3491.184 kb on + strandat 3491.185 kb on - strandat 3491.186 kb on + strandat 3491.205 kb on - strandat 3491.205 kb on - strandat 3491.416 kb on + strand, within Echvi_2916at 3491.417 kb on - strand, within Echvi_2916

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
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3,487,953 + -0.1
3,487,956 + -0.2
3,487,956 + +2.6
3,487,956 + +0.3
3,487,956 + -1.2
3,487,982 - -0.3
3,488,051 - -0.6
3,488,139 + +0.3
3,488,139 + -0.5
3,488,139 + -1.3
3,488,140 - -0.3
3,488,140 - -1.3
3,488,145 - -1.2
3,488,177 + +0.0
3,488,178 - +1.5
3,488,188 + +0.6
3,488,188 + +0.6
3,488,188 + -1.0
3,488,188 + +0.8
3,488,189 - +1.8
3,488,402 - Echvi_2913 0.32 -0.7
3,488,436 - Echvi_2913 0.37 -1.2
3,488,474 + Echvi_2913 0.41 +0.3
3,488,477 - Echvi_2913 0.42 -0.2
3,488,502 - Echvi_2913 0.45 -1.3
3,488,511 - Echvi_2913 0.46 -0.5
3,488,543 - Echvi_2913 0.50 +1.8
3,488,543 - Echvi_2913 0.50 -0.7
3,488,587 + Echvi_2913 0.55 +0.7
3,488,588 - Echvi_2913 0.56 +0.2
3,488,592 + Echvi_2913 0.56 +0.4
3,488,592 + Echvi_2913 0.56 -0.0
3,488,593 - Echvi_2913 0.56 -0.1
3,488,670 - Echvi_2913 0.66 -0.0
3,488,684 - Echvi_2913 0.67 +1.1
3,488,684 - Echvi_2913 0.67 -0.6
3,488,689 - Echvi_2913 0.68 -0.3
3,488,761 + Echvi_2913 0.77 -1.1
3,488,762 - Echvi_2913 0.77 -0.5
3,488,762 - Echvi_2913 0.77 +0.4
3,488,814 - Echvi_2913 0.84 +0.6
3,488,833 + Echvi_2913 0.86 -0.7
3,488,834 - Echvi_2913 0.86 -0.2
3,488,834 - Echvi_2913 0.86 -0.5
3,488,888 - +0.6
3,488,931 + -0.5
3,488,931 + +0.3
3,490,411 - +0.1
3,490,411 - -0.5
3,490,411 - +1.4
3,490,417 - -0.6
3,490,417 - -0.3
3,490,417 - -1.7
3,490,422 - -1.7
3,490,430 - -0.5
3,490,492 + +0.5
3,490,492 + +1.4
3,490,820 + Echvi_2915 0.46 -1.2
3,490,871 + Echvi_2915 0.54 -0.6
3,490,872 - Echvi_2915 0.54 -0.3
3,490,880 - Echvi_2915 0.56 -0.0
3,490,944 + Echvi_2915 0.66 +2.1
3,490,947 + Echvi_2915 0.66 -0.9
3,490,960 + Echvi_2915 0.68 -0.2
3,490,960 + Echvi_2915 0.68 -1.1
3,490,966 - Echvi_2915 0.69 +0.5
3,490,966 - Echvi_2915 0.69 +0.0
3,490,992 + Echvi_2915 0.74 +0.3
3,490,993 - Echvi_2915 0.74 +0.3
3,491,036 - Echvi_2915 0.81 +0.4
3,491,065 - Echvi_2915 0.85 +0.4
3,491,070 - Echvi_2915 0.86 +0.2
3,491,084 - Echvi_2915 0.89 -0.5
3,491,084 - Echvi_2915 0.89 -0.8
3,491,084 - Echvi_2915 0.89 +0.3
3,491,166 - -0.8
3,491,166 - -0.1
3,491,184 + +1.5
3,491,184 + +0.8
3,491,184 + +0.4
3,491,185 - +0.2
3,491,186 + -0.8
3,491,205 - -0.5
3,491,205 - +0.3
3,491,416 + Echvi_2916 0.27 -0.7
3,491,417 - Echvi_2916 0.27 +0.8

Or see this region's nucleotide sequence