Experiment: L-Glutamic (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_2912 and Echvi_2913 are separated by 156 nucleotides Echvi_2913 and Echvi_2914 overlap by 4 nucleotides Echvi_2914 and Echvi_2915 are separated by 118 nucleotides Echvi_2915 and Echvi_2916 are separated by 50 nucleotides
Echvi_2912: Echvi_2912 - Kef-type K+ transport systems, membrane components, at 3,486,682 to 3,487,983
_2912
Echvi_2913: Echvi_2913 - Predicted permeases, at 3,488,140 to 3,488,946
_2913
Echvi_2914: Echvi_2914 - putative nicotinate phosphoribosyltransferase, at 3,488,943 to 3,490,418
_2914
Echvi_2915: Echvi_2915 - Amidases related to nicotinamidase, at 3,490,537 to 3,491,154
_2915
Echvi_2916: Echvi_2916 - phenazine biosynthesis protein PhzF family, at 3,491,205 to 3,491,996
_2916
Position (kb)
3488
3489
3490
3491 Strain fitness (log2 ratio)
-1
0
1
2 at 3487.953 kb on + strand at 3487.956 kb on + strand at 3487.956 kb on + strand at 3487.956 kb on + strand at 3487.956 kb on + strand at 3487.982 kb on - strand at 3488.051 kb on - strand at 3488.139 kb on + strand at 3488.139 kb on + strand at 3488.139 kb on + strand at 3488.140 kb on - strand at 3488.140 kb on - strand at 3488.145 kb on - strand at 3488.177 kb on + strand at 3488.178 kb on - strand at 3488.188 kb on + strand at 3488.188 kb on + strand at 3488.188 kb on + strand at 3488.188 kb on + strand at 3488.189 kb on - strand at 3488.402 kb on - strand, within Echvi_2913 at 3488.436 kb on - strand, within Echvi_2913 at 3488.474 kb on + strand, within Echvi_2913 at 3488.477 kb on - strand, within Echvi_2913 at 3488.502 kb on - strand, within Echvi_2913 at 3488.511 kb on - strand, within Echvi_2913 at 3488.543 kb on - strand, within Echvi_2913 at 3488.543 kb on - strand, within Echvi_2913 at 3488.587 kb on + strand, within Echvi_2913 at 3488.588 kb on - strand, within Echvi_2913 at 3488.592 kb on + strand, within Echvi_2913 at 3488.592 kb on + strand, within Echvi_2913 at 3488.593 kb on - strand, within Echvi_2913 at 3488.670 kb on - strand, within Echvi_2913 at 3488.684 kb on - strand, within Echvi_2913 at 3488.684 kb on - strand, within Echvi_2913 at 3488.689 kb on - strand, within Echvi_2913 at 3488.761 kb on + strand, within Echvi_2913 at 3488.762 kb on - strand, within Echvi_2913 at 3488.762 kb on - strand, within Echvi_2913 at 3488.814 kb on - strand, within Echvi_2913 at 3488.833 kb on + strand, within Echvi_2913 at 3488.834 kb on - strand, within Echvi_2913 at 3488.834 kb on - strand, within Echvi_2913 at 3488.888 kb on - strand at 3488.931 kb on + strand at 3488.931 kb on + strand at 3490.411 kb on - strand at 3490.411 kb on - strand at 3490.411 kb on - strand at 3490.417 kb on - strand at 3490.417 kb on - strand at 3490.417 kb on - strand at 3490.422 kb on - strand at 3490.430 kb on - strand at 3490.492 kb on + strand at 3490.492 kb on + strand at 3490.820 kb on + strand, within Echvi_2915 at 3490.871 kb on + strand, within Echvi_2915 at 3490.872 kb on - strand, within Echvi_2915 at 3490.880 kb on - strand, within Echvi_2915 at 3490.944 kb on + strand, within Echvi_2915 at 3490.947 kb on + strand, within Echvi_2915 at 3490.960 kb on + strand, within Echvi_2915 at 3490.960 kb on + strand, within Echvi_2915 at 3490.966 kb on - strand, within Echvi_2915 at 3490.966 kb on - strand, within Echvi_2915 at 3490.992 kb on + strand, within Echvi_2915 at 3490.993 kb on - strand, within Echvi_2915 at 3491.036 kb on - strand, within Echvi_2915 at 3491.065 kb on - strand, within Echvi_2915 at 3491.070 kb on - strand, within Echvi_2915 at 3491.084 kb on - strand, within Echvi_2915 at 3491.084 kb on - strand, within Echvi_2915 at 3491.084 kb on - strand, within Echvi_2915 at 3491.166 kb on - strand at 3491.166 kb on - strand at 3491.184 kb on + strand at 3491.184 kb on + strand at 3491.184 kb on + strand at 3491.185 kb on - strand at 3491.186 kb on + strand at 3491.205 kb on - strand at 3491.205 kb on - strand at 3491.416 kb on + strand, within Echvi_2916 at 3491.417 kb on - strand, within Echvi_2916
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (N) remove 3,487,953 + -0.1 3,487,956 + -0.2 3,487,956 + +2.6 3,487,956 + +0.3 3,487,956 + -1.2 3,487,982 - -0.3 3,488,051 - -0.6 3,488,139 + +0.3 3,488,139 + -0.5 3,488,139 + -1.3 3,488,140 - -0.3 3,488,140 - -1.3 3,488,145 - -1.2 3,488,177 + +0.0 3,488,178 - +1.5 3,488,188 + +0.6 3,488,188 + +0.6 3,488,188 + -1.0 3,488,188 + +0.8 3,488,189 - +1.8 3,488,402 - Echvi_2913 0.32 -0.7 3,488,436 - Echvi_2913 0.37 -1.2 3,488,474 + Echvi_2913 0.41 +0.3 3,488,477 - Echvi_2913 0.42 -0.2 3,488,502 - Echvi_2913 0.45 -1.3 3,488,511 - Echvi_2913 0.46 -0.5 3,488,543 - Echvi_2913 0.50 +1.8 3,488,543 - Echvi_2913 0.50 -0.7 3,488,587 + Echvi_2913 0.55 +0.7 3,488,588 - Echvi_2913 0.56 +0.2 3,488,592 + Echvi_2913 0.56 +0.4 3,488,592 + Echvi_2913 0.56 -0.0 3,488,593 - Echvi_2913 0.56 -0.1 3,488,670 - Echvi_2913 0.66 -0.0 3,488,684 - Echvi_2913 0.67 +1.1 3,488,684 - Echvi_2913 0.67 -0.6 3,488,689 - Echvi_2913 0.68 -0.3 3,488,761 + Echvi_2913 0.77 -1.1 3,488,762 - Echvi_2913 0.77 -0.5 3,488,762 - Echvi_2913 0.77 +0.4 3,488,814 - Echvi_2913 0.84 +0.6 3,488,833 + Echvi_2913 0.86 -0.7 3,488,834 - Echvi_2913 0.86 -0.2 3,488,834 - Echvi_2913 0.86 -0.5 3,488,888 - +0.6 3,488,931 + -0.5 3,488,931 + +0.3 3,490,411 - +0.1 3,490,411 - -0.5 3,490,411 - +1.4 3,490,417 - -0.6 3,490,417 - -0.3 3,490,417 - -1.7 3,490,422 - -1.7 3,490,430 - -0.5 3,490,492 + +0.5 3,490,492 + +1.4 3,490,820 + Echvi_2915 0.46 -1.2 3,490,871 + Echvi_2915 0.54 -0.6 3,490,872 - Echvi_2915 0.54 -0.3 3,490,880 - Echvi_2915 0.56 -0.0 3,490,944 + Echvi_2915 0.66 +2.1 3,490,947 + Echvi_2915 0.66 -0.9 3,490,960 + Echvi_2915 0.68 -0.2 3,490,960 + Echvi_2915 0.68 -1.1 3,490,966 - Echvi_2915 0.69 +0.5 3,490,966 - Echvi_2915 0.69 +0.0 3,490,992 + Echvi_2915 0.74 +0.3 3,490,993 - Echvi_2915 0.74 +0.3 3,491,036 - Echvi_2915 0.81 +0.4 3,491,065 - Echvi_2915 0.85 +0.4 3,491,070 - Echvi_2915 0.86 +0.2 3,491,084 - Echvi_2915 0.89 -0.5 3,491,084 - Echvi_2915 0.89 -0.8 3,491,084 - Echvi_2915 0.89 +0.3 3,491,166 - -0.8 3,491,166 - -0.1 3,491,184 + +1.5 3,491,184 + +0.8 3,491,184 + +0.4 3,491,185 - +0.2 3,491,186 + -0.8 3,491,205 - -0.5 3,491,205 - +0.3 3,491,416 + Echvi_2916 0.27 -0.7 3,491,417 - Echvi_2916 0.27 +0.8
Or see this region's nucleotide sequence