Experiment: L-Glutamic (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_2469 and Echvi_2470 are separated by 509 nucleotides Echvi_2470 and Echvi_2471 are separated by 87 nucleotides Echvi_2471 and Echvi_2472 are separated by 2 nucleotides
Echvi_2469: Echvi_2469 - hypothetical protein, at 2,929,691 to 2,930,320
_2469
Echvi_2470: Echvi_2470 - hypothetical protein, at 2,930,830 to 2,930,997
_2470
Echvi_2471: Echvi_2471 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 2,931,085 to 2,932,545
_2471
Echvi_2472: Echvi_2472 - The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family, at 2,932,548 to 2,935,724
_2472
Position (kb)
2931
2932
2933 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2930.107 kb on + strand, within Echvi_2469 at 2930.107 kb on + strand, within Echvi_2469 at 2930.107 kb on + strand, within Echvi_2469 at 2930.107 kb on + strand, within Echvi_2469 at 2930.193 kb on - strand, within Echvi_2469 at 2930.247 kb on + strand, within Echvi_2469 at 2930.323 kb on + strand at 2930.323 kb on + strand at 2930.323 kb on + strand at 2930.328 kb on + strand at 2930.329 kb on - strand at 2930.342 kb on + strand at 2930.343 kb on - strand at 2930.345 kb on + strand at 2930.351 kb on + strand at 2930.354 kb on + strand at 2930.431 kb on + strand at 2930.482 kb on - strand at 2930.488 kb on - strand at 2930.493 kb on - strand at 2930.493 kb on - strand at 2930.502 kb on - strand at 2930.523 kb on - strand at 2930.523 kb on - strand at 2930.584 kb on + strand at 2930.584 kb on + strand at 2930.584 kb on + strand at 2930.584 kb on + strand at 2930.594 kb on + strand at 2930.647 kb on - strand at 2930.653 kb on + strand at 2930.653 kb on + strand at 2930.654 kb on - strand at 2930.659 kb on + strand at 2930.719 kb on + strand at 2930.719 kb on + strand at 2930.740 kb on + strand at 2930.740 kb on + strand at 2930.740 kb on + strand at 2930.749 kb on + strand at 2930.772 kb on + strand at 2930.772 kb on + strand at 2930.773 kb on - strand at 2930.773 kb on - strand at 2930.777 kb on - strand at 2930.788 kb on + strand at 2930.819 kb on - strand at 2930.922 kb on - strand, within Echvi_2470 at 2930.925 kb on + strand, within Echvi_2470 at 2930.925 kb on + strand, within Echvi_2470 at 2930.926 kb on - strand, within Echvi_2470 at 2930.926 kb on - strand, within Echvi_2470 at 2930.926 kb on - strand, within Echvi_2470 at 2930.979 kb on + strand, within Echvi_2470 at 2931.001 kb on - strand at 2931.148 kb on + strand at 2931.149 kb on - strand at 2931.154 kb on + strand at 2931.249 kb on + strand, within Echvi_2471 at 2931.288 kb on + strand, within Echvi_2471 at 2931.291 kb on + strand, within Echvi_2471 at 2931.397 kb on - strand, within Echvi_2471 at 2931.406 kb on + strand, within Echvi_2471 at 2931.406 kb on + strand, within Echvi_2471 at 2931.526 kb on + strand, within Echvi_2471 at 2931.555 kb on - strand, within Echvi_2471 at 2931.589 kb on - strand, within Echvi_2471 at 2931.589 kb on - strand, within Echvi_2471 at 2931.592 kb on + strand, within Echvi_2471 at 2931.592 kb on + strand, within Echvi_2471 at 2931.593 kb on - strand, within Echvi_2471 at 2931.603 kb on + strand, within Echvi_2471 at 2931.603 kb on + strand, within Echvi_2471 at 2931.603 kb on + strand, within Echvi_2471 at 2931.666 kb on - strand, within Echvi_2471 at 2931.685 kb on - strand, within Echvi_2471 at 2931.741 kb on + strand, within Echvi_2471 at 2931.741 kb on + strand, within Echvi_2471 at 2931.742 kb on - strand, within Echvi_2471 at 2931.742 kb on - strand, within Echvi_2471 at 2931.784 kb on + strand, within Echvi_2471 at 2931.785 kb on - strand, within Echvi_2471 at 2931.899 kb on + strand, within Echvi_2471 at 2931.899 kb on + strand, within Echvi_2471 at 2931.903 kb on + strand, within Echvi_2471 at 2931.914 kb on - strand, within Echvi_2471 at 2931.946 kb on + strand, within Echvi_2471 at 2931.946 kb on + strand, within Echvi_2471 at 2931.950 kb on + strand, within Echvi_2471 at 2931.950 kb on + strand, within Echvi_2471 at 2931.950 kb on + strand, within Echvi_2471 at 2931.985 kb on + strand, within Echvi_2471 at 2931.986 kb on - strand, within Echvi_2471 at 2931.986 kb on - strand, within Echvi_2471 at 2931.997 kb on - strand, within Echvi_2471 at 2932.094 kb on - strand, within Echvi_2471 at 2932.094 kb on - strand, within Echvi_2471 at 2932.097 kb on + strand, within Echvi_2471 at 2932.097 kb on + strand, within Echvi_2471 at 2932.098 kb on - strand, within Echvi_2471 at 2932.113 kb on + strand, within Echvi_2471 at 2932.113 kb on + strand, within Echvi_2471 at 2932.114 kb on - strand, within Echvi_2471 at 2932.114 kb on - strand, within Echvi_2471 at 2932.125 kb on + strand, within Echvi_2471 at 2932.125 kb on + strand, within Echvi_2471 at 2932.125 kb on + strand, within Echvi_2471 at 2932.169 kb on + strand, within Echvi_2471 at 2932.169 kb on + strand, within Echvi_2471 at 2932.169 kb on + strand, within Echvi_2471 at 2932.176 kb on + strand, within Echvi_2471 at 2932.176 kb on + strand, within Echvi_2471 at 2932.177 kb on - strand, within Echvi_2471 at 2932.178 kb on + strand, within Echvi_2471 at 2932.181 kb on + strand, within Echvi_2471 at 2932.182 kb on - strand, within Echvi_2471 at 2932.193 kb on + strand, within Echvi_2471 at 2932.193 kb on + strand, within Echvi_2471 at 2932.193 kb on + strand, within Echvi_2471 at 2932.194 kb on - strand, within Echvi_2471 at 2932.204 kb on - strand, within Echvi_2471 at 2932.204 kb on - strand, within Echvi_2471 at 2932.206 kb on - strand, within Echvi_2471 at 2932.258 kb on + strand, within Echvi_2471 at 2932.273 kb on + strand, within Echvi_2471 at 2932.273 kb on + strand, within Echvi_2471 at 2932.273 kb on + strand, within Echvi_2471 at 2932.273 kb on + strand, within Echvi_2471 at 2932.274 kb on - strand, within Echvi_2471 at 2932.362 kb on - strand, within Echvi_2471 at 2932.362 kb on - strand, within Echvi_2471 at 2932.396 kb on - strand, within Echvi_2471 at 2932.436 kb on + strand at 2932.437 kb on - strand at 2932.437 kb on - strand at 2932.465 kb on - strand at 2932.465 kb on - strand at 2932.467 kb on + strand at 2932.467 kb on + strand at 2932.469 kb on + strand at 2932.469 kb on + strand at 2932.470 kb on - strand at 2932.486 kb on - strand at 2932.501 kb on + strand at 2932.504 kb on + strand at 2932.515 kb on + strand at 2932.515 kb on + strand at 2932.545 kb on + strand at 2932.545 kb on + strand at 2932.546 kb on - strand at 2932.546 kb on - strand at 2932.549 kb on + strand at 2932.576 kb on + strand at 2932.576 kb on + strand at 2932.576 kb on + strand at 2932.576 kb on + strand at 2932.577 kb on - strand at 2932.577 kb on - strand at 2932.601 kb on + strand at 2932.602 kb on - strand at 2932.603 kb on + strand at 2932.603 kb on + strand at 2932.603 kb on + strand at 2932.664 kb on + strand at 2932.670 kb on + strand at 2932.670 kb on + strand at 2932.808 kb on + strand at 2932.808 kb on + strand at 2932.809 kb on - strand at 2932.893 kb on + strand, within Echvi_2472 at 2932.894 kb on - strand, within Echvi_2472 at 2932.894 kb on - strand, within Echvi_2472 at 2932.903 kb on + strand, within Echvi_2472 at 2932.907 kb on + strand at 2932.907 kb on + strand, within Echvi_2472 at 2932.908 kb on - strand, within Echvi_2472 at 2932.908 kb on - strand, within Echvi_2472 at 2932.908 kb on - strand, within Echvi_2472 at 2932.935 kb on - strand, within Echvi_2472 at 2932.938 kb on + strand, within Echvi_2472 at 2932.938 kb on + strand, within Echvi_2472 at 2932.955 kb on + strand, within Echvi_2472 at 2932.956 kb on - strand, within Echvi_2472 at 2933.027 kb on - strand, within Echvi_2472 at 2933.027 kb on - strand, within Echvi_2472 at 2933.039 kb on + strand, within Echvi_2472 at 2933.039 kb on + strand, within Echvi_2472 at 2933.039 kb on + strand, within Echvi_2472 at 2933.040 kb on - strand, within Echvi_2472 at 2933.096 kb on + strand, within Echvi_2472 at 2933.096 kb on + strand, within Echvi_2472 at 2933.096 kb on + strand, within Echvi_2472 at 2933.097 kb on - strand, within Echvi_2472 at 2933.132 kb on + strand, within Echvi_2472 at 2933.132 kb on + strand, within Echvi_2472 at 2933.133 kb on - strand, within Echvi_2472 at 2933.136 kb on - strand, within Echvi_2472 at 2933.218 kb on + strand, within Echvi_2472 at 2933.218 kb on + strand, within Echvi_2472 at 2933.218 kb on + strand, within Echvi_2472 at 2933.219 kb on - strand, within Echvi_2472 at 2933.219 kb on - strand, within Echvi_2472 at 2933.219 kb on - strand, within Echvi_2472 at 2933.226 kb on - strand, within Echvi_2472 at 2933.228 kb on - strand, within Echvi_2472 at 2933.252 kb on - strand, within Echvi_2472 at 2933.368 kb on + strand, within Echvi_2472 at 2933.368 kb on + strand, within Echvi_2472 at 2933.368 kb on + strand, within Echvi_2472 at 2933.368 kb on + strand, within Echvi_2472 at 2933.369 kb on - strand, within Echvi_2472 at 2933.369 kb on - strand, within Echvi_2472 at 2933.369 kb on - strand, within Echvi_2472 at 2933.369 kb on - strand, within Echvi_2472 at 2933.370 kb on + strand, within Echvi_2472 at 2933.370 kb on + strand, within Echvi_2472 at 2933.370 kb on + strand, within Echvi_2472 at 2933.371 kb on - strand, within Echvi_2472 at 2933.371 kb on - strand, within Echvi_2472 at 2933.371 kb on - strand, within Echvi_2472 at 2933.377 kb on + strand, within Echvi_2472 at 2933.378 kb on - strand, within Echvi_2472 at 2933.378 kb on - strand, within Echvi_2472 at 2933.426 kb on + strand, within Echvi_2472 at 2933.427 kb on - strand, within Echvi_2472 at 2933.439 kb on - strand, within Echvi_2472
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (N) remove 2,930,107 + Echvi_2469 0.66 -0.6 2,930,107 + Echvi_2469 0.66 -0.2 2,930,107 + Echvi_2469 0.66 +0.9 2,930,107 + Echvi_2469 0.66 +0.5 2,930,193 - Echvi_2469 0.80 -0.7 2,930,247 + Echvi_2469 0.88 -0.1 2,930,323 + -0.4 2,930,323 + +0.9 2,930,323 + +0.0 2,930,328 + -0.9 2,930,329 - +0.1 2,930,342 + +0.6 2,930,343 - +0.3 2,930,345 + +0.1 2,930,351 + -1.9 2,930,354 + -1.1 2,930,431 + -0.7 2,930,482 - -0.2 2,930,488 - -0.4 2,930,493 - +0.2 2,930,493 - -0.1 2,930,502 - -0.7 2,930,523 - -2.3 2,930,523 - +0.8 2,930,584 + +0.6 2,930,584 + -0.1 2,930,584 + -0.1 2,930,584 + +0.9 2,930,594 + -0.7 2,930,647 - -1.2 2,930,653 + +0.3 2,930,653 + -0.2 2,930,654 - -0.6 2,930,659 + -1.1 2,930,719 + -0.7 2,930,719 + +0.6 2,930,740 + -0.4 2,930,740 + +0.3 2,930,740 + +0.3 2,930,749 + +0.0 2,930,772 + -0.3 2,930,772 + +0.2 2,930,773 - +0.2 2,930,773 - -0.9 2,930,777 - -0.7 2,930,788 + +0.1 2,930,819 - +0.8 2,930,922 - Echvi_2470 0.55 -0.2 2,930,925 + Echvi_2470 0.57 -0.5 2,930,925 + Echvi_2470 0.57 -2.2 2,930,926 - Echvi_2470 0.57 -1.0 2,930,926 - Echvi_2470 0.57 -0.2 2,930,926 - Echvi_2470 0.57 -3.7 2,930,979 + Echvi_2470 0.89 +0.7 2,931,001 - +2.3 2,931,148 + +0.7 2,931,149 - -0.2 2,931,154 + -1.8 2,931,249 + Echvi_2471 0.11 +0.2 2,931,288 + Echvi_2471 0.14 +0.9 2,931,291 + Echvi_2471 0.14 -0.2 2,931,397 - Echvi_2471 0.21 -1.0 2,931,406 + Echvi_2471 0.22 +0.1 2,931,406 + Echvi_2471 0.22 -1.2 2,931,526 + Echvi_2471 0.30 -1.5 2,931,555 - Echvi_2471 0.32 -0.7 2,931,589 - Echvi_2471 0.34 -0.4 2,931,589 - Echvi_2471 0.34 -1.1 2,931,592 + Echvi_2471 0.35 -1.3 2,931,592 + Echvi_2471 0.35 -0.1 2,931,593 - Echvi_2471 0.35 -0.7 2,931,603 + Echvi_2471 0.35 -0.9 2,931,603 + Echvi_2471 0.35 +0.9 2,931,603 + Echvi_2471 0.35 +0.3 2,931,666 - Echvi_2471 0.40 -1.3 2,931,685 - Echvi_2471 0.41 -0.9 2,931,741 + Echvi_2471 0.45 -0.4 2,931,741 + Echvi_2471 0.45 -1.0 2,931,742 - Echvi_2471 0.45 +0.0 2,931,742 - Echvi_2471 0.45 -0.8 2,931,784 + Echvi_2471 0.48 -1.2 2,931,785 - Echvi_2471 0.48 +0.3 2,931,899 + Echvi_2471 0.56 +0.2 2,931,899 + Echvi_2471 0.56 -1.2 2,931,903 + Echvi_2471 0.56 +0.3 2,931,914 - Echvi_2471 0.57 -0.4 2,931,946 + Echvi_2471 0.59 +0.5 2,931,946 + Echvi_2471 0.59 +0.5 2,931,950 + Echvi_2471 0.59 -2.3 2,931,950 + Echvi_2471 0.59 -0.3 2,931,950 + Echvi_2471 0.59 +0.3 2,931,985 + Echvi_2471 0.62 +0.1 2,931,986 - Echvi_2471 0.62 -1.0 2,931,986 - Echvi_2471 0.62 +0.3 2,931,997 - Echvi_2471 0.62 -1.1 2,932,094 - Echvi_2471 0.69 -1.1 2,932,094 - Echvi_2471 0.69 -1.5 2,932,097 + Echvi_2471 0.69 -1.2 2,932,097 + Echvi_2471 0.69 +0.2 2,932,098 - Echvi_2471 0.69 -0.7 2,932,113 + Echvi_2471 0.70 +0.3 2,932,113 + Echvi_2471 0.70 -0.3 2,932,114 - Echvi_2471 0.70 +0.0 2,932,114 - Echvi_2471 0.70 -0.8 2,932,125 + Echvi_2471 0.71 -0.2 2,932,125 + Echvi_2471 0.71 +0.9 2,932,125 + Echvi_2471 0.71 -1.0 2,932,169 + Echvi_2471 0.74 -1.5 2,932,169 + Echvi_2471 0.74 +0.5 2,932,169 + Echvi_2471 0.74 +0.3 2,932,176 + Echvi_2471 0.75 -0.6 2,932,176 + Echvi_2471 0.75 -1.0 2,932,177 - Echvi_2471 0.75 +0.1 2,932,178 + Echvi_2471 0.75 -1.0 2,932,181 + Echvi_2471 0.75 +0.5 2,932,182 - Echvi_2471 0.75 -0.5 2,932,193 + Echvi_2471 0.76 -1.1 2,932,193 + Echvi_2471 0.76 +0.9 2,932,193 + Echvi_2471 0.76 -1.7 2,932,194 - Echvi_2471 0.76 -0.9 2,932,204 - Echvi_2471 0.77 -0.7 2,932,204 - Echvi_2471 0.77 -0.4 2,932,206 - Echvi_2471 0.77 -1.2 2,932,258 + Echvi_2471 0.80 -1.4 2,932,273 + Echvi_2471 0.81 +0.3 2,932,273 + Echvi_2471 0.81 -0.3 2,932,273 + Echvi_2471 0.81 -0.8 2,932,273 + Echvi_2471 0.81 -1.1 2,932,274 - Echvi_2471 0.81 -0.5 2,932,362 - Echvi_2471 0.87 -0.3 2,932,362 - Echvi_2471 0.87 -0.2 2,932,396 - Echvi_2471 0.90 +0.0 2,932,436 + -1.4 2,932,437 - -1.1 2,932,437 - -0.2 2,932,465 - -0.8 2,932,465 - -1.2 2,932,467 + -1.5 2,932,467 + -0.6 2,932,469 + -1.2 2,932,469 + -1.3 2,932,470 - +0.3 2,932,486 - -1.2 2,932,501 + +0.4 2,932,504 + -0.7 2,932,515 + +0.5 2,932,515 + +0.6 2,932,545 + +0.2 2,932,545 + -1.1 2,932,546 - -0.1 2,932,546 - +0.4 2,932,549 + -0.4 2,932,576 + -0.2 2,932,576 + +0.5 2,932,576 + +0.8 2,932,576 + -0.5 2,932,577 - -0.5 2,932,577 - -0.6 2,932,601 + +1.9 2,932,602 - -1.1 2,932,603 + -0.2 2,932,603 + -0.5 2,932,603 + +0.3 2,932,664 + -1.6 2,932,670 + -1.1 2,932,670 + -0.1 2,932,808 + +0.2 2,932,808 + +0.0 2,932,809 - -2.9 2,932,893 + Echvi_2472 0.11 -1.0 2,932,894 - Echvi_2472 0.11 -0.1 2,932,894 - Echvi_2472 0.11 +0.6 2,932,903 + Echvi_2472 0.11 -1.4 2,932,907 + +0.9 2,932,907 + Echvi_2472 0.11 -2.3 2,932,908 - Echvi_2472 0.11 +0.0 2,932,908 - Echvi_2472 0.11 -0.0 2,932,908 - Echvi_2472 0.11 -1.4 2,932,935 - Echvi_2472 0.12 -1.2 2,932,938 + Echvi_2472 0.12 +1.9 2,932,938 + Echvi_2472 0.12 +0.0 2,932,955 + Echvi_2472 0.13 -0.5 2,932,956 - Echvi_2472 0.13 +0.3 2,933,027 - Echvi_2472 0.15 -2.0 2,933,027 - Echvi_2472 0.15 -0.5 2,933,039 + Echvi_2472 0.15 -0.1 2,933,039 + Echvi_2472 0.15 -2.0 2,933,039 + Echvi_2472 0.15 -1.6 2,933,040 - Echvi_2472 0.15 -0.7 2,933,096 + Echvi_2472 0.17 +0.5 2,933,096 + Echvi_2472 0.17 -0.8 2,933,096 + Echvi_2472 0.17 -1.1 2,933,097 - Echvi_2472 0.17 -0.7 2,933,132 + Echvi_2472 0.18 -0.9 2,933,132 + Echvi_2472 0.18 -0.1 2,933,133 - Echvi_2472 0.18 -1.4 2,933,136 - Echvi_2472 0.19 -0.4 2,933,218 + Echvi_2472 0.21 +0.1 2,933,218 + Echvi_2472 0.21 -1.3 2,933,218 + Echvi_2472 0.21 +0.0 2,933,219 - Echvi_2472 0.21 -1.4 2,933,219 - Echvi_2472 0.21 -1.7 2,933,219 - Echvi_2472 0.21 -0.7 2,933,226 - Echvi_2472 0.21 -0.2 2,933,228 - Echvi_2472 0.21 -0.4 2,933,252 - Echvi_2472 0.22 -0.1 2,933,368 + Echvi_2472 0.26 -0.5 2,933,368 + Echvi_2472 0.26 -1.6 2,933,368 + Echvi_2472 0.26 +2.3 2,933,368 + Echvi_2472 0.26 -0.2 2,933,369 - Echvi_2472 0.26 -2.2 2,933,369 - Echvi_2472 0.26 -0.6 2,933,369 - Echvi_2472 0.26 +0.2 2,933,369 - Echvi_2472 0.26 -0.4 2,933,370 + Echvi_2472 0.26 -0.9 2,933,370 + Echvi_2472 0.26 -0.4 2,933,370 + Echvi_2472 0.26 +0.3 2,933,371 - Echvi_2472 0.26 -0.9 2,933,371 - Echvi_2472 0.26 -0.1 2,933,371 - Echvi_2472 0.26 -0.7 2,933,377 + Echvi_2472 0.26 -2.1 2,933,378 - Echvi_2472 0.26 -1.9 2,933,378 - Echvi_2472 0.26 -0.1 2,933,426 + Echvi_2472 0.28 -1.5 2,933,427 - Echvi_2472 0.28 +0.4 2,933,439 - Echvi_2472 0.28 -1.1
Or see this region's nucleotide sequence