Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2380

Experiment: L-Glutamic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2379 and Echvi_2380 are separated by 74 nucleotidesEchvi_2380 and Echvi_2381 overlap by 11 nucleotidesEchvi_2381 and Echvi_2382 are separated by 232 nucleotides Echvi_2379: Echvi_2379 - Outer membrane protein/protective antigen OMA87, at 2,820,106 to 2,822,385 _2379 Echvi_2380: Echvi_2380 - 6-phosphofructokinase, at 2,822,460 to 2,823,446 _2380 Echvi_2381: Echvi_2381 - methylglyoxal synthase, at 2,823,436 to 2,823,822 _2381 Echvi_2382: Echvi_2382 - primosomal protein N', at 2,824,055 to 2,826,577 _2382 Position (kb) 2822 2823 2824Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2821.472 kb on + strand, within Echvi_2379at 2821.472 kb on + strand, within Echvi_2379at 2821.472 kb on + strand, within Echvi_2379at 2821.472 kb on + strand, within Echvi_2379at 2821.473 kb on - strand, within Echvi_2379at 2821.473 kb on - strand, within Echvi_2379at 2821.473 kb on - strand, within Echvi_2379at 2821.477 kb on - strand, within Echvi_2379at 2821.483 kb on + strand, within Echvi_2379at 2821.586 kb on + strand, within Echvi_2379at 2821.650 kb on + strand, within Echvi_2379at 2821.660 kb on + strand, within Echvi_2379at 2821.660 kb on + strand, within Echvi_2379at 2821.697 kb on + strand, within Echvi_2379at 2821.698 kb on - strand, within Echvi_2379at 2821.804 kb on + strand, within Echvi_2379at 2821.805 kb on - strand, within Echvi_2379at 2821.805 kb on - strand, within Echvi_2379at 2821.838 kb on + strand, within Echvi_2379at 2821.867 kb on - strand, within Echvi_2379at 2821.886 kb on + strand, within Echvi_2379at 2821.887 kb on - strand, within Echvi_2379at 2821.921 kb on + strand, within Echvi_2379at 2821.921 kb on + strand, within Echvi_2379at 2821.921 kb on + strand, within Echvi_2379at 2821.934 kb on - strand, within Echvi_2379at 2821.954 kb on - strand, within Echvi_2379at 2821.954 kb on - strand, within Echvi_2379at 2821.954 kb on - strand, within Echvi_2379at 2822.026 kb on + strand, within Echvi_2379at 2822.047 kb on - strand, within Echvi_2379at 2822.050 kb on - strand, within Echvi_2379at 2822.064 kb on + strand, within Echvi_2379at 2822.125 kb on - strand, within Echvi_2379at 2822.125 kb on - strand, within Echvi_2379at 2822.166 kb on + strandat 2822.166 kb on + strandat 2822.225 kb on + strandat 2822.226 kb on - strandat 2822.229 kb on + strandat 2822.229 kb on + strandat 2822.229 kb on + strandat 2822.230 kb on - strandat 2822.231 kb on + strandat 2822.232 kb on - strandat 2822.232 kb on - strandat 2822.317 kb on - strandat 2822.384 kb on - strandat 2822.384 kb on - strandat 2822.401 kb on + strandat 2822.401 kb on + strandat 2822.402 kb on - strandat 2822.402 kb on - strandat 2822.445 kb on + strandat 2822.445 kb on + strandat 2822.445 kb on + strandat 2822.446 kb on - strandat 2822.454 kb on + strandat 2822.465 kb on + strandat 2822.517 kb on + strandat 2822.518 kb on - strandat 2822.518 kb on - strandat 2822.541 kb on - strandat 2822.542 kb on + strandat 2822.543 kb on - strandat 2822.701 kb on + strand, within Echvi_2380at 2822.702 kb on - strand, within Echvi_2380at 2822.778 kb on + strand, within Echvi_2380at 2822.925 kb on + strand, within Echvi_2380at 2822.931 kb on + strand, within Echvi_2380at 2822.963 kb on + strand, within Echvi_2380at 2823.000 kb on - strand, within Echvi_2380at 2823.008 kb on + strand, within Echvi_2380at 2823.051 kb on + strand, within Echvi_2380at 2823.175 kb on + strand, within Echvi_2380at 2823.175 kb on + strand, within Echvi_2380at 2823.237 kb on - strand, within Echvi_2380at 2823.310 kb on + strand, within Echvi_2380at 2823.328 kb on + strand, within Echvi_2380at 2823.329 kb on - strand, within Echvi_2380at 2823.341 kb on + strand, within Echvi_2380at 2823.344 kb on - strand, within Echvi_2380at 2823.438 kb on - strandat 2823.452 kb on - strandat 2823.463 kb on + strandat 2823.463 kb on + strandat 2823.464 kb on - strandat 2823.464 kb on - strandat 2823.514 kb on - strand, within Echvi_2381at 2823.547 kb on + strand, within Echvi_2381at 2823.548 kb on - strand, within Echvi_2381at 2823.548 kb on - strand, within Echvi_2381at 2823.548 kb on - strand, within Echvi_2381at 2823.631 kb on + strand, within Echvi_2381at 2823.673 kb on + strand, within Echvi_2381at 2823.709 kb on - strand, within Echvi_2381at 2823.725 kb on - strand, within Echvi_2381at 2823.725 kb on - strand, within Echvi_2381at 2823.725 kb on - strand, within Echvi_2381at 2823.731 kb on - strand, within Echvi_2381at 2823.776 kb on - strand, within Echvi_2381at 2823.851 kb on - strandat 2823.886 kb on + strandat 2823.888 kb on + strandat 2823.889 kb on - strandat 2824.005 kb on + strandat 2824.006 kb on - strandat 2824.049 kb on + strandat 2824.186 kb on - strandat 2824.265 kb on - strandat 2824.307 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
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2,821,472 + Echvi_2379 0.60 +0.5
2,821,472 + Echvi_2379 0.60 +1.5
2,821,472 + Echvi_2379 0.60 +0.5
2,821,472 + Echvi_2379 0.60 -1.1
2,821,473 - Echvi_2379 0.60 -0.2
2,821,473 - Echvi_2379 0.60 +0.0
2,821,473 - Echvi_2379 0.60 +0.4
2,821,477 - Echvi_2379 0.60 +0.1
2,821,483 + Echvi_2379 0.60 +2.0
2,821,586 + Echvi_2379 0.65 +0.5
2,821,650 + Echvi_2379 0.68 -1.2
2,821,660 + Echvi_2379 0.68 -2.3
2,821,660 + Echvi_2379 0.68 -0.0
2,821,697 + Echvi_2379 0.70 -1.1
2,821,698 - Echvi_2379 0.70 -0.4
2,821,804 + Echvi_2379 0.74 +1.1
2,821,805 - Echvi_2379 0.75 +0.1
2,821,805 - Echvi_2379 0.75 -0.4
2,821,838 + Echvi_2379 0.76 +0.1
2,821,867 - Echvi_2379 0.77 +0.3
2,821,886 + Echvi_2379 0.78 -0.4
2,821,887 - Echvi_2379 0.78 -0.2
2,821,921 + Echvi_2379 0.80 -0.6
2,821,921 + Echvi_2379 0.80 -1.2
2,821,921 + Echvi_2379 0.80 -0.3
2,821,934 - Echvi_2379 0.80 -1.3
2,821,954 - Echvi_2379 0.81 -0.2
2,821,954 - Echvi_2379 0.81 +1.2
2,821,954 - Echvi_2379 0.81 -0.3
2,822,026 + Echvi_2379 0.84 +0.0
2,822,047 - Echvi_2379 0.85 -0.9
2,822,050 - Echvi_2379 0.85 +0.4
2,822,064 + Echvi_2379 0.86 -0.8
2,822,125 - Echvi_2379 0.89 +1.2
2,822,125 - Echvi_2379 0.89 -0.8
2,822,166 + -0.7
2,822,166 + +0.0
2,822,225 + +0.9
2,822,226 - +2.0
2,822,229 + +0.4
2,822,229 + +0.3
2,822,229 + -0.3
2,822,230 - -1.2
2,822,231 + +0.2
2,822,232 - -0.2
2,822,232 - +1.4
2,822,317 - +1.1
2,822,384 - -0.0
2,822,384 - +0.5
2,822,401 + +0.4
2,822,401 + -1.7
2,822,402 - -0.2
2,822,402 - -0.1
2,822,445 + -0.2
2,822,445 + +0.1
2,822,445 + -0.4
2,822,446 - -0.1
2,822,454 + +0.4
2,822,465 + -2.2
2,822,517 + -0.6
2,822,518 - +0.4
2,822,518 - -0.7
2,822,541 - -1.0
2,822,542 + -0.7
2,822,543 - -1.8
2,822,701 + Echvi_2380 0.24 -2.7
2,822,702 - Echvi_2380 0.25 -0.4
2,822,778 + Echvi_2380 0.32 -0.4
2,822,925 + Echvi_2380 0.47 -1.9
2,822,931 + Echvi_2380 0.48 -1.5
2,822,963 + Echvi_2380 0.51 +0.1
2,823,000 - Echvi_2380 0.55 -2.6
2,823,008 + Echvi_2380 0.56 -0.0
2,823,051 + Echvi_2380 0.60 -2.5
2,823,175 + Echvi_2380 0.72 -0.4
2,823,175 + Echvi_2380 0.72 -2.8
2,823,237 - Echvi_2380 0.79 -1.5
2,823,310 + Echvi_2380 0.86 -0.2
2,823,328 + Echvi_2380 0.88 +0.6
2,823,329 - Echvi_2380 0.88 -2.4
2,823,341 + Echvi_2380 0.89 -1.3
2,823,344 - Echvi_2380 0.90 -0.7
2,823,438 - -0.7
2,823,452 - +1.1
2,823,463 + -0.4
2,823,463 + -1.3
2,823,464 - +0.3
2,823,464 - +1.0
2,823,514 - Echvi_2381 0.20 -0.5
2,823,547 + Echvi_2381 0.29 +1.4
2,823,548 - Echvi_2381 0.29 +1.7
2,823,548 - Echvi_2381 0.29 -0.6
2,823,548 - Echvi_2381 0.29 -0.7
2,823,631 + Echvi_2381 0.50 -0.7
2,823,673 + Echvi_2381 0.61 -0.2
2,823,709 - Echvi_2381 0.71 +0.5
2,823,725 - Echvi_2381 0.75 +0.6
2,823,725 - Echvi_2381 0.75 -0.4
2,823,725 - Echvi_2381 0.75 -0.2
2,823,731 - Echvi_2381 0.76 +0.2
2,823,776 - Echvi_2381 0.88 +0.6
2,823,851 - -0.2
2,823,886 + +0.0
2,823,888 + +1.0
2,823,889 - -0.4
2,824,005 + +0.8
2,824,006 - +0.5
2,824,049 + +0.1
2,824,186 - -0.4
2,824,265 - -0.0
2,824,307 + -0.7

Or see this region's nucleotide sequence