Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2377

Experiment: L-Glutamic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2376 and Echvi_2377 are separated by 84 nucleotidesEchvi_2377 and Echvi_2378 are separated by 51 nucleotides Echvi_2376: Echvi_2376 - tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB, at 2,813,283 to 2,814,743 _2376 Echvi_2377: Echvi_2377 - hypothetical protein, at 2,814,828 to 2,814,980 _2377 Echvi_2378: Echvi_2378 - Uncharacterized protein conserved in bacteria, at 2,815,032 to 2,820,089 _2378 Position (kb) 2814 2815Strain fitness (log2 ratio) -2 -1 0 1 2at 2813.867 kb on - strand, within Echvi_2376at 2813.867 kb on - strand, within Echvi_2376at 2813.867 kb on - strand, within Echvi_2376at 2813.867 kb on - strand, within Echvi_2376at 2813.867 kb on - strand, within Echvi_2376at 2813.867 kb on - strand, within Echvi_2376at 2813.867 kb on - strand, within Echvi_2376at 2813.867 kb on - strand, within Echvi_2376at 2813.883 kb on - strand, within Echvi_2376at 2813.952 kb on + strand, within Echvi_2376at 2813.953 kb on - strand, within Echvi_2376at 2814.038 kb on - strand, within Echvi_2376at 2814.196 kb on - strand, within Echvi_2376at 2814.351 kb on + strand, within Echvi_2376at 2814.505 kb on - strand, within Echvi_2376at 2814.626 kb on - strandat 2814.634 kb on - strandat 2814.732 kb on + strandat 2814.836 kb on - strandat 2814.905 kb on - strand, within Echvi_2377at 2814.932 kb on + strand, within Echvi_2377at 2814.942 kb on - strand, within Echvi_2377at 2814.942 kb on - strand, within Echvi_2377at 2814.994 kb on + strandat 2814.999 kb on - strandat 2814.999 kb on - strandat 2815.002 kb on - strandat 2815.002 kb on - strandat 2815.019 kb on + strandat 2815.076 kb on + strandat 2815.076 kb on + strandat 2815.077 kb on - strandat 2815.081 kb on + strandat 2815.082 kb on - strandat 2815.084 kb on + strandat 2815.084 kb on + strandat 2815.085 kb on - strandat 2815.102 kb on + strandat 2815.106 kb on + strandat 2815.106 kb on + strandat 2815.106 kb on + strandat 2815.112 kb on - strandat 2815.154 kb on + strandat 2815.154 kb on + strandat 2815.176 kb on + strandat 2815.187 kb on + strandat 2815.221 kb on + strandat 2815.221 kb on + strandat 2815.221 kb on + strandat 2815.221 kb on + strandat 2815.222 kb on - strandat 2815.260 kb on + strandat 2815.302 kb on - strandat 2815.325 kb on - strandat 2815.435 kb on + strandat 2815.551 kb on - strand, within Echvi_2378at 2815.551 kb on - strand, within Echvi_2378at 2815.551 kb on - strand, within Echvi_2378at 2815.552 kb on + strand, within Echvi_2378at 2815.552 kb on + strand, within Echvi_2378at 2815.552 kb on + strand, within Echvi_2378at 2815.552 kb on + strand, within Echvi_2378at 2815.557 kb on + strand, within Echvi_2378at 2815.598 kb on - strand, within Echvi_2378at 2815.650 kb on + strand, within Echvi_2378at 2815.690 kb on - strand, within Echvi_2378at 2815.745 kb on + strand, within Echvi_2378at 2815.745 kb on + strand, within Echvi_2378at 2815.798 kb on - strand, within Echvi_2378at 2815.831 kb on + strand, within Echvi_2378at 2815.832 kb on - strand, within Echvi_2378at 2815.846 kb on + strand, within Echvi_2378at 2815.846 kb on + strand, within Echvi_2378at 2815.847 kb on - strand, within Echvi_2378at 2815.894 kb on + strand, within Echvi_2378at 2815.913 kb on - strand, within Echvi_2378at 2815.924 kb on + strand, within Echvi_2378at 2815.925 kb on - strand, within Echvi_2378

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
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2,813,867 - Echvi_2376 0.40 -0.8
2,813,867 - Echvi_2376 0.40 -0.6
2,813,867 - Echvi_2376 0.40 -1.7
2,813,867 - Echvi_2376 0.40 -0.2
2,813,867 - Echvi_2376 0.40 +0.8
2,813,867 - Echvi_2376 0.40 +1.0
2,813,867 - Echvi_2376 0.40 -0.3
2,813,867 - Echvi_2376 0.40 -0.0
2,813,883 - Echvi_2376 0.41 +0.8
2,813,952 + Echvi_2376 0.46 -1.2
2,813,953 - Echvi_2376 0.46 -0.9
2,814,038 - Echvi_2376 0.52 +0.7
2,814,196 - Echvi_2376 0.62 +0.3
2,814,351 + Echvi_2376 0.73 -1.4
2,814,505 - Echvi_2376 0.84 +0.4
2,814,626 - +1.8
2,814,634 - +0.2
2,814,732 + -0.4
2,814,836 - +0.2
2,814,905 - Echvi_2377 0.50 -0.4
2,814,932 + Echvi_2377 0.68 -0.4
2,814,942 - Echvi_2377 0.75 -2.3
2,814,942 - Echvi_2377 0.75 -0.8
2,814,994 + +1.0
2,814,999 - -1.5
2,814,999 - -0.0
2,815,002 - +0.8
2,815,002 - -0.3
2,815,019 + +0.0
2,815,076 + +0.1
2,815,076 + +1.4
2,815,077 - +0.7
2,815,081 + +0.5
2,815,082 - -1.1
2,815,084 + -0.8
2,815,084 + -0.0
2,815,085 - +0.1
2,815,102 + +0.3
2,815,106 + +0.0
2,815,106 + +0.4
2,815,106 + +1.0
2,815,112 - -0.3
2,815,154 + +2.0
2,815,154 + -0.7
2,815,176 + -0.7
2,815,187 + -0.8
2,815,221 + +0.4
2,815,221 + -0.7
2,815,221 + -0.4
2,815,221 + -0.7
2,815,222 - +0.9
2,815,260 + -1.6
2,815,302 - +0.4
2,815,325 - +0.3
2,815,435 + -0.4
2,815,551 - Echvi_2378 0.10 +0.5
2,815,551 - Echvi_2378 0.10 -0.3
2,815,551 - Echvi_2378 0.10 -0.4
2,815,552 + Echvi_2378 0.10 +1.1
2,815,552 + Echvi_2378 0.10 -1.0
2,815,552 + Echvi_2378 0.10 +1.5
2,815,552 + Echvi_2378 0.10 -0.1
2,815,557 + Echvi_2378 0.10 +1.2
2,815,598 - Echvi_2378 0.11 -0.5
2,815,650 + Echvi_2378 0.12 +0.7
2,815,690 - Echvi_2378 0.13 +0.8
2,815,745 + Echvi_2378 0.14 -0.4
2,815,745 + Echvi_2378 0.14 -0.2
2,815,798 - Echvi_2378 0.15 +1.2
2,815,831 + Echvi_2378 0.16 -0.6
2,815,832 - Echvi_2378 0.16 -0.2
2,815,846 + Echvi_2378 0.16 +0.5
2,815,846 + Echvi_2378 0.16 +0.2
2,815,847 - Echvi_2378 0.16 -1.1
2,815,894 + Echvi_2378 0.17 +0.6
2,815,913 - Echvi_2378 0.17 -0.1
2,815,924 + Echvi_2378 0.18 -1.0
2,815,925 - Echvi_2378 0.18 +0.7

Or see this region's nucleotide sequence