Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2297

Experiment: L-Glutamic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2296 and Echvi_2297 are separated by 103 nucleotidesEchvi_2297 and Echvi_2298 are separated by 370 nucleotidesEchvi_2298 and Echvi_2299 are separated by 31 nucleotides Echvi_2296: Echvi_2296 - Arabinose efflux permease, at 2,718,867 to 2,720,048 _2296 Echvi_2297: Echvi_2297 - methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain, at 2,720,152 to 2,722,212 _2297 Echvi_2298: Echvi_2298 - hypothetical protein, at 2,722,583 to 2,722,810 _2298 Echvi_2299: Echvi_2299 - Phosphopantetheinyl transferase, at 2,722,842 to 2,723,618 _2299 Position (kb) 2720 2721 2722 2723Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2719.243 kb on - strand, within Echvi_2296at 2719.244 kb on + strand, within Echvi_2296at 2719.253 kb on + strand, within Echvi_2296at 2719.253 kb on + strand, within Echvi_2296at 2719.286 kb on - strand, within Echvi_2296at 2719.520 kb on + strand, within Echvi_2296at 2719.520 kb on + strand, within Echvi_2296at 2719.520 kb on + strand, within Echvi_2296at 2719.520 kb on + strand, within Echvi_2296at 2719.520 kb on + strand, within Echvi_2296at 2719.521 kb on - strand, within Echvi_2296at 2719.542 kb on + strand, within Echvi_2296at 2719.555 kb on + strand, within Echvi_2296at 2719.556 kb on - strand, within Echvi_2296at 2719.591 kb on - strand, within Echvi_2296at 2719.591 kb on - strand, within Echvi_2296at 2719.649 kb on + strand, within Echvi_2296at 2719.649 kb on + strand, within Echvi_2296at 2719.650 kb on - strand, within Echvi_2296at 2719.759 kb on + strand, within Echvi_2296at 2719.799 kb on + strand, within Echvi_2296at 2719.800 kb on - strand, within Echvi_2296at 2719.905 kb on - strand, within Echvi_2296at 2719.965 kb on - strandat 2719.985 kb on + strandat 2720.008 kb on - strandat 2720.066 kb on + strandat 2721.821 kb on + strand, within Echvi_2297at 2721.864 kb on + strand, within Echvi_2297at 2721.893 kb on + strand, within Echvi_2297at 2721.893 kb on + strand, within Echvi_2297at 2722.211 kb on - strandat 2722.219 kb on + strandat 2722.220 kb on - strandat 2722.327 kb on - strandat 2722.333 kb on + strandat 2722.343 kb on - strandat 2722.343 kb on - strandat 2722.345 kb on - strandat 2722.345 kb on - strandat 2722.422 kb on - strandat 2722.446 kb on - strandat 2722.558 kb on + strandat 2722.558 kb on + strandat 2722.558 kb on + strandat 2722.603 kb on + strandat 2722.718 kb on - strand, within Echvi_2298at 2722.729 kb on + strand, within Echvi_2298at 2722.777 kb on + strand, within Echvi_2298at 2722.808 kb on + strandat 2722.841 kb on - strandat 2722.900 kb on + strandat 2722.901 kb on - strandat 2722.953 kb on + strand, within Echvi_2299at 2722.953 kb on + strand, within Echvi_2299at 2722.960 kb on + strand, within Echvi_2299at 2722.967 kb on + strand, within Echvi_2299at 2722.967 kb on + strand, within Echvi_2299at 2722.967 kb on + strand, within Echvi_2299at 2722.968 kb on - strand, within Echvi_2299at 2722.968 kb on - strand, within Echvi_2299at 2722.970 kb on - strand, within Echvi_2299at 2723.020 kb on - strand, within Echvi_2299at 2723.048 kb on + strand, within Echvi_2299at 2723.063 kb on + strand, within Echvi_2299at 2723.142 kb on + strand, within Echvi_2299

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
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2,719,243 - Echvi_2296 0.32 +0.4
2,719,244 + Echvi_2296 0.32 +0.1
2,719,253 + Echvi_2296 0.33 -0.6
2,719,253 + Echvi_2296 0.33 -0.3
2,719,286 - Echvi_2296 0.35 +1.1
2,719,520 + Echvi_2296 0.55 -0.7
2,719,520 + Echvi_2296 0.55 -1.7
2,719,520 + Echvi_2296 0.55 -0.3
2,719,520 + Echvi_2296 0.55 -0.6
2,719,520 + Echvi_2296 0.55 +0.5
2,719,521 - Echvi_2296 0.55 +1.1
2,719,542 + Echvi_2296 0.57 -0.9
2,719,555 + Echvi_2296 0.58 +0.1
2,719,556 - Echvi_2296 0.58 -0.6
2,719,591 - Echvi_2296 0.61 +0.6
2,719,591 - Echvi_2296 0.61 -0.4
2,719,649 + Echvi_2296 0.66 -0.6
2,719,649 + Echvi_2296 0.66 +2.3
2,719,650 - Echvi_2296 0.66 +0.6
2,719,759 + Echvi_2296 0.75 -0.5
2,719,799 + Echvi_2296 0.79 -0.7
2,719,800 - Echvi_2296 0.79 -0.6
2,719,905 - Echvi_2296 0.88 -0.3
2,719,965 - +0.5
2,719,985 + +0.5
2,720,008 - -0.6
2,720,066 + -0.4
2,721,821 + Echvi_2297 0.81 +0.4
2,721,864 + Echvi_2297 0.83 -0.3
2,721,893 + Echvi_2297 0.84 +1.6
2,721,893 + Echvi_2297 0.84 -2.3
2,722,211 - +1.2
2,722,219 + +0.2
2,722,220 - -1.0
2,722,327 - -0.6
2,722,333 + -0.2
2,722,343 - -1.0
2,722,343 - +0.4
2,722,345 - +0.7
2,722,345 - -0.3
2,722,422 - +0.6
2,722,446 - -0.4
2,722,558 + -0.4
2,722,558 + -0.1
2,722,558 + -0.2
2,722,603 + +0.5
2,722,718 - Echvi_2298 0.59 +0.4
2,722,729 + Echvi_2298 0.64 +4.0
2,722,777 + Echvi_2298 0.85 +1.5
2,722,808 + +0.3
2,722,841 - -0.3
2,722,900 + +0.0
2,722,901 - -0.9
2,722,953 + Echvi_2299 0.14 +0.6
2,722,953 + Echvi_2299 0.14 +0.0
2,722,960 + Echvi_2299 0.15 -0.8
2,722,967 + Echvi_2299 0.16 +0.6
2,722,967 + Echvi_2299 0.16 -0.4
2,722,967 + Echvi_2299 0.16 +1.0
2,722,968 - Echvi_2299 0.16 -0.9
2,722,968 - Echvi_2299 0.16 +0.1
2,722,970 - Echvi_2299 0.16 -0.2
2,723,020 - Echvi_2299 0.23 -1.4
2,723,048 + Echvi_2299 0.27 -1.5
2,723,063 + Echvi_2299 0.28 +0.1
2,723,142 + Echvi_2299 0.39 -0.7

Or see this region's nucleotide sequence