Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2243

Experiment: L-Glutamic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2241 and Echvi_2242 are separated by 24 nucleotidesEchvi_2242 and Echvi_2243 are separated by 7 nucleotidesEchvi_2243 and Echvi_2244 are separated by 78 nucleotidesEchvi_2244 and Echvi_2245 are separated by 33 nucleotidesEchvi_2245 and Echvi_2246 are separated by 184 nucleotides Echvi_2241: Echvi_2241 - ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain, at 2,663,957 to 2,665,945 _2241 Echvi_2242: Echvi_2242 - hypothetical protein, at 2,665,970 to 2,666,155 _2242 Echvi_2243: Echvi_2243 - hypothetical protein, at 2,666,163 to 2,666,375 _2243 Echvi_2244: Echvi_2244 - hypothetical protein, at 2,666,454 to 2,666,600 _2244 Echvi_2245: Echvi_2245 - hypothetical protein, at 2,666,634 to 2,666,810 _2245 Echvi_2246: Echvi_2246 - hypothetical protein, at 2,666,995 to 2,667,198 _2246 Position (kb) 2666 2667Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2665.194 kb on + strand, within Echvi_2241at 2665.195 kb on - strand, within Echvi_2241at 2665.206 kb on + strand, within Echvi_2241at 2665.222 kb on - strand, within Echvi_2241at 2665.315 kb on + strand, within Echvi_2241at 2665.315 kb on + strand, within Echvi_2241at 2665.315 kb on + strand, within Echvi_2241at 2665.316 kb on - strand, within Echvi_2241at 2665.344 kb on + strand, within Echvi_2241at 2665.345 kb on - strand, within Echvi_2241at 2665.406 kb on - strand, within Echvi_2241at 2665.438 kb on - strand, within Echvi_2241at 2665.478 kb on - strand, within Echvi_2241at 2665.480 kb on - strand, within Echvi_2241at 2665.560 kb on + strand, within Echvi_2241at 2665.571 kb on + strand, within Echvi_2241at 2665.571 kb on + strand, within Echvi_2241at 2665.627 kb on + strand, within Echvi_2241at 2665.659 kb on + strand, within Echvi_2241at 2665.660 kb on - strand, within Echvi_2241at 2665.681 kb on + strand, within Echvi_2241at 2665.682 kb on - strand, within Echvi_2241at 2665.702 kb on + strand, within Echvi_2241at 2665.877 kb on + strandat 2665.944 kb on - strandat 2665.947 kb on + strandat 2665.947 kb on + strandat 2665.947 kb on + strandat 2665.948 kb on - strandat 2665.948 kb on - strandat 2665.974 kb on - strandat 2666.041 kb on - strand, within Echvi_2242at 2666.203 kb on + strand, within Echvi_2243at 2666.203 kb on + strand, within Echvi_2243at 2666.263 kb on + strand, within Echvi_2243at 2666.280 kb on + strand, within Echvi_2243at 2666.283 kb on - strand, within Echvi_2243at 2666.288 kb on - strand, within Echvi_2243at 2666.349 kb on + strand, within Echvi_2243at 2666.404 kb on + strandat 2666.490 kb on - strand, within Echvi_2244at 2666.581 kb on - strand, within Echvi_2244at 2666.599 kb on - strandat 2666.603 kb on + strandat 2666.604 kb on - strandat 2666.604 kb on - strandat 2666.642 kb on + strandat 2666.681 kb on + strand, within Echvi_2245at 2666.693 kb on + strand, within Echvi_2245at 2666.808 kb on + strandat 2666.839 kb on + strandat 2666.860 kb on + strandat 2666.892 kb on - strandat 2666.938 kb on - strandat 2666.938 kb on - strandat 2666.938 kb on - strandat 2666.938 kb on - strandat 2666.938 kb on - strandat 2666.938 kb on - strandat 2666.940 kb on - strandat 2666.968 kb on + strandat 2666.979 kb on + strandat 2666.979 kb on + strandat 2666.989 kb on - strandat 2666.989 kb on - strandat 2667.004 kb on + strandat 2667.004 kb on + strandat 2667.004 kb on + strandat 2667.005 kb on - strandat 2667.006 kb on + strandat 2667.006 kb on + strandat 2667.006 kb on + strandat 2667.009 kb on - strandat 2667.015 kb on + strandat 2667.016 kb on - strand, within Echvi_2246at 2667.197 kb on - strandat 2667.208 kb on - strandat 2667.208 kb on - strandat 2667.253 kb on + strandat 2667.280 kb on - strandat 2667.292 kb on - strandat 2667.318 kb on - strandat 2667.325 kb on + strandat 2667.325 kb on + strandat 2667.326 kb on - strandat 2667.326 kb on - strandat 2667.326 kb on - strandat 2667.326 kb on - strandat 2667.327 kb on + strandat 2667.327 kb on + strandat 2667.327 kb on + strandat 2667.328 kb on - strandat 2667.328 kb on - strandat 2667.328 kb on - strandat 2667.328 kb on - strandat 2667.328 kb on - strandat 2667.328 kb on - strandat 2667.328 kb on - strandat 2667.328 kb on - strandat 2667.332 kb on + strandat 2667.332 kb on + strandat 2667.332 kb on + strandat 2667.338 kb on + strandat 2667.338 kb on + strandat 2667.341 kb on + strandat 2667.371 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
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2,665,194 + Echvi_2241 0.62 -0.5
2,665,195 - Echvi_2241 0.62 -0.4
2,665,206 + Echvi_2241 0.63 +0.7
2,665,222 - Echvi_2241 0.64 +0.1
2,665,315 + Echvi_2241 0.68 -1.0
2,665,315 + Echvi_2241 0.68 +1.0
2,665,315 + Echvi_2241 0.68 -1.8
2,665,316 - Echvi_2241 0.68 +1.2
2,665,344 + Echvi_2241 0.70 +0.2
2,665,345 - Echvi_2241 0.70 -0.2
2,665,406 - Echvi_2241 0.73 -0.7
2,665,438 - Echvi_2241 0.74 +0.4
2,665,478 - Echvi_2241 0.76 +1.1
2,665,480 - Echvi_2241 0.77 +0.2
2,665,560 + Echvi_2241 0.81 -0.8
2,665,571 + Echvi_2241 0.81 +0.4
2,665,571 + Echvi_2241 0.81 +0.5
2,665,627 + Echvi_2241 0.84 -0.8
2,665,659 + Echvi_2241 0.86 +0.1
2,665,660 - Echvi_2241 0.86 +0.3
2,665,681 + Echvi_2241 0.87 +0.2
2,665,682 - Echvi_2241 0.87 -0.7
2,665,702 + Echvi_2241 0.88 +1.0
2,665,877 + +1.2
2,665,944 - +0.0
2,665,947 + +0.3
2,665,947 + +0.5
2,665,947 + -0.6
2,665,948 - -0.6
2,665,948 - -2.7
2,665,974 - -0.0
2,666,041 - Echvi_2242 0.38 +3.0
2,666,203 + Echvi_2243 0.19 -0.4
2,666,203 + Echvi_2243 0.19 -0.3
2,666,263 + Echvi_2243 0.47 -0.9
2,666,280 + Echvi_2243 0.55 -0.6
2,666,283 - Echvi_2243 0.56 +0.0
2,666,288 - Echvi_2243 0.59 -1.8
2,666,349 + Echvi_2243 0.87 +0.2
2,666,404 + +0.6
2,666,490 - Echvi_2244 0.24 -0.2
2,666,581 - Echvi_2244 0.86 -0.2
2,666,599 - -0.1
2,666,603 + -0.6
2,666,604 - -0.2
2,666,604 - -0.7
2,666,642 + -1.4
2,666,681 + Echvi_2245 0.27 +1.4
2,666,693 + Echvi_2245 0.33 +0.4
2,666,808 + +0.5
2,666,839 + -0.7
2,666,860 + +0.8
2,666,892 - -0.7
2,666,938 - +0.1
2,666,938 - -0.1
2,666,938 - +0.7
2,666,938 - -0.2
2,666,938 - -0.2
2,666,938 - -0.2
2,666,940 - -0.3
2,666,968 + +0.0
2,666,979 + +1.0
2,666,979 + -0.9
2,666,989 - -0.5
2,666,989 - +0.2
2,667,004 + -0.8
2,667,004 + +0.4
2,667,004 + -0.8
2,667,005 - +1.3
2,667,006 + +0.8
2,667,006 + +0.7
2,667,006 + +0.2
2,667,009 - +0.0
2,667,015 + -0.6
2,667,016 - Echvi_2246 0.10 +0.4
2,667,197 - +0.0
2,667,208 - -0.6
2,667,208 - -0.9
2,667,253 + +0.7
2,667,280 - -0.3
2,667,292 - +2.7
2,667,318 - -0.3
2,667,325 + +0.5
2,667,325 + -0.2
2,667,326 - -0.5
2,667,326 - -0.6
2,667,326 - +1.0
2,667,326 - -0.5
2,667,327 + +0.9
2,667,327 + +0.1
2,667,327 + +0.7
2,667,328 - -0.2
2,667,328 - -0.8
2,667,328 - +0.2
2,667,328 - -0.3
2,667,328 - -0.9
2,667,328 - -1.0
2,667,328 - -1.2
2,667,328 - -1.4
2,667,332 + -0.6
2,667,332 + +0.4
2,667,332 + +1.8
2,667,338 + -1.4
2,667,338 + -0.6
2,667,341 + -0.7
2,667,371 - -0.0

Or see this region's nucleotide sequence