Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1728

Experiment: L-Glutamic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1727 and Echvi_1728 are separated by 13 nucleotidesEchvi_1728 and Echvi_1729 are separated by 220 nucleotides Echvi_1727: Echvi_1727 - ABC-type multidrug transport system, ATPase and permease components, at 2,035,800 to 2,037,575 _1727 Echvi_1728: Echvi_1728 - pseudouridylate synthase I, at 2,037,589 to 2,038,344 _1728 Echvi_1729: Echvi_1729 - hypothetical protein, at 2,038,565 to 2,039,044 _1729 Position (kb) 2037 2038 2039Strain fitness (log2 ratio) -1 0 1 2at 2036.620 kb on - strand, within Echvi_1727at 2036.680 kb on - strand, within Echvi_1727at 2036.689 kb on + strand, within Echvi_1727at 2036.696 kb on + strand, within Echvi_1727at 2036.697 kb on - strand, within Echvi_1727at 2036.697 kb on - strand, within Echvi_1727at 2036.709 kb on + strand, within Echvi_1727at 2036.710 kb on - strand, within Echvi_1727at 2036.722 kb on - strand, within Echvi_1727at 2036.744 kb on + strand, within Echvi_1727at 2036.753 kb on - strand, within Echvi_1727at 2036.807 kb on - strand, within Echvi_1727at 2036.818 kb on + strand, within Echvi_1727at 2036.818 kb on + strand, within Echvi_1727at 2036.818 kb on + strand, within Echvi_1727at 2036.819 kb on - strand, within Echvi_1727at 2036.819 kb on - strand, within Echvi_1727at 2036.819 kb on - strand, within Echvi_1727at 2036.823 kb on + strand, within Echvi_1727at 2036.901 kb on + strand, within Echvi_1727at 2036.901 kb on + strand, within Echvi_1727at 2036.902 kb on - strand, within Echvi_1727at 2036.925 kb on - strand, within Echvi_1727at 2036.927 kb on + strand, within Echvi_1727at 2036.927 kb on + strand, within Echvi_1727at 2036.927 kb on + strand, within Echvi_1727at 2036.927 kb on + strand, within Echvi_1727at 2036.927 kb on + strand, within Echvi_1727at 2036.927 kb on + strand, within Echvi_1727at 2036.928 kb on - strand, within Echvi_1727at 2036.928 kb on - strand, within Echvi_1727at 2036.928 kb on - strand, within Echvi_1727at 2036.985 kb on + strand, within Echvi_1727at 2037.008 kb on + strand, within Echvi_1727at 2037.010 kb on + strand, within Echvi_1727at 2037.042 kb on + strand, within Echvi_1727at 2037.070 kb on - strand, within Echvi_1727at 2037.099 kb on + strand, within Echvi_1727at 2037.144 kb on + strand, within Echvi_1727at 2037.174 kb on - strand, within Echvi_1727at 2037.315 kb on + strand, within Echvi_1727at 2037.328 kb on - strand, within Echvi_1727at 2037.353 kb on - strand, within Echvi_1727at 2037.366 kb on + strand, within Echvi_1727at 2037.367 kb on - strand, within Echvi_1727at 2037.458 kb on + strandat 2037.459 kb on - strandat 2037.459 kb on - strandat 2037.508 kb on + strandat 2037.509 kb on - strandat 2037.515 kb on + strandat 2037.615 kb on + strandat 2037.725 kb on - strand, within Echvi_1728at 2037.786 kb on + strand, within Echvi_1728at 2037.787 kb on - strand, within Echvi_1728at 2038.007 kb on + strand, within Echvi_1728at 2038.068 kb on - strand, within Echvi_1728at 2038.165 kb on - strand, within Echvi_1728at 2038.165 kb on - strand, within Echvi_1728at 2038.326 kb on - strandat 2038.359 kb on - strandat 2038.467 kb on + strandat 2038.468 kb on - strandat 2038.475 kb on + strandat 2038.475 kb on + strandat 2038.476 kb on - strandat 2038.483 kb on - strandat 2038.498 kb on + strandat 2038.509 kb on - strandat 2038.509 kb on - strandat 2038.528 kb on + strandat 2039.158 kb on + strandat 2039.159 kb on - strandat 2039.200 kb on - strandat 2039.223 kb on + strandat 2039.224 kb on - strandat 2039.233 kb on + strandat 2039.242 kb on + strandat 2039.242 kb on + strandat 2039.270 kb on - strandat 2039.332 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
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2,036,620 - Echvi_1727 0.46 -0.8
2,036,680 - Echvi_1727 0.50 +1.1
2,036,689 + Echvi_1727 0.50 +0.5
2,036,696 + Echvi_1727 0.50 -0.6
2,036,697 - Echvi_1727 0.51 +1.7
2,036,697 - Echvi_1727 0.51 -1.6
2,036,709 + Echvi_1727 0.51 -0.4
2,036,710 - Echvi_1727 0.51 -0.0
2,036,722 - Echvi_1727 0.52 -0.2
2,036,744 + Echvi_1727 0.53 -0.2
2,036,753 - Echvi_1727 0.54 +1.4
2,036,807 - Echvi_1727 0.57 +0.4
2,036,818 + Echvi_1727 0.57 -0.3
2,036,818 + Echvi_1727 0.57 +0.2
2,036,818 + Echvi_1727 0.57 +0.7
2,036,819 - Echvi_1727 0.57 +0.9
2,036,819 - Echvi_1727 0.57 +0.8
2,036,819 - Echvi_1727 0.57 +1.4
2,036,823 + Echvi_1727 0.58 +0.3
2,036,901 + Echvi_1727 0.62 +0.9
2,036,901 + Echvi_1727 0.62 -1.3
2,036,902 - Echvi_1727 0.62 +1.5
2,036,925 - Echvi_1727 0.63 +1.0
2,036,927 + Echvi_1727 0.63 +0.4
2,036,927 + Echvi_1727 0.63 -0.2
2,036,927 + Echvi_1727 0.63 -0.1
2,036,927 + Echvi_1727 0.63 +0.1
2,036,927 + Echvi_1727 0.63 -1.7
2,036,927 + Echvi_1727 0.63 -0.0
2,036,928 - Echvi_1727 0.64 -0.2
2,036,928 - Echvi_1727 0.64 -0.1
2,036,928 - Echvi_1727 0.64 -0.5
2,036,985 + Echvi_1727 0.67 -0.9
2,037,008 + Echvi_1727 0.68 -0.2
2,037,010 + Echvi_1727 0.68 +1.5
2,037,042 + Echvi_1727 0.70 +0.5
2,037,070 - Echvi_1727 0.72 +0.7
2,037,099 + Echvi_1727 0.73 +0.4
2,037,144 + Echvi_1727 0.76 -0.6
2,037,174 - Echvi_1727 0.77 -1.1
2,037,315 + Echvi_1727 0.85 -0.8
2,037,328 - Echvi_1727 0.86 -0.4
2,037,353 - Echvi_1727 0.87 -0.2
2,037,366 + Echvi_1727 0.88 -0.5
2,037,367 - Echvi_1727 0.88 +1.4
2,037,458 + -0.3
2,037,459 - -0.5
2,037,459 - -0.2
2,037,508 + -0.2
2,037,509 - +1.5
2,037,515 + +0.0
2,037,615 + +0.7
2,037,725 - Echvi_1728 0.18 -0.7
2,037,786 + Echvi_1728 0.26 -0.5
2,037,787 - Echvi_1728 0.26 +0.2
2,038,007 + Echvi_1728 0.55 -1.0
2,038,068 - Echvi_1728 0.63 -0.4
2,038,165 - Echvi_1728 0.76 -0.9
2,038,165 - Echvi_1728 0.76 -0.8
2,038,326 - +1.3
2,038,359 - -0.7
2,038,467 + -0.4
2,038,468 - +1.8
2,038,475 + -0.2
2,038,475 + -1.1
2,038,476 - -0.7
2,038,483 - -0.5
2,038,498 + -1.2
2,038,509 - +0.1
2,038,509 - +0.7
2,038,528 + +1.4
2,039,158 + +0.9
2,039,159 - -0.4
2,039,200 - +1.1
2,039,223 + +0.5
2,039,224 - -0.2
2,039,233 + -1.5
2,039,242 + -0.2
2,039,242 + +0.7
2,039,270 - -0.4
2,039,332 + +0.4

Or see this region's nucleotide sequence