Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1358

Experiment: L-Glutamic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1355 and Echvi_1356 overlap by 11 nucleotidesEchvi_1356 and Echvi_1357 overlap by 4 nucleotidesEchvi_1357 and Echvi_1358 are separated by 3 nucleotidesEchvi_1358 and Echvi_1359 overlap by 4 nucleotidesEchvi_1359 and Echvi_1360 overlap by 14 nucleotides Echvi_1355: Echvi_1355 - Bacteroides conjugative transposon TraM protein, at 1,562,360 to 1,563,604 _1355 Echvi_1356: Echvi_1356 - hypothetical protein, at 1,563,594 to 1,563,854 _1356 Echvi_1357: Echvi_1357 - Bacteroides conjugative transposon TraK protein, at 1,563,851 to 1,564,468 _1357 Echvi_1358: Echvi_1358 - Bacteroides conjugative transposon TraJ protein, at 1,564,472 to 1,565,449 _1358 Echvi_1359: Echvi_1359 - hypothetical protein, at 1,565,446 to 1,566,084 _1359 Echvi_1360: Echvi_1360 - hypothetical protein, at 1,566,071 to 1,566,718 _1360 Position (kb) 1564 1565 1566Strain fitness (log2 ratio) -2 -1 0 1 2at 1563.609 kb on + strandat 1563.609 kb on + strandat 1563.609 kb on + strandat 1563.610 kb on - strandat 1563.628 kb on + strand, within Echvi_1356at 1563.683 kb on + strand, within Echvi_1356at 1563.707 kb on + strand, within Echvi_1356at 1563.708 kb on - strand, within Echvi_1356at 1564.014 kb on + strand, within Echvi_1357at 1564.017 kb on + strand, within Echvi_1357at 1564.018 kb on - strand, within Echvi_1357at 1564.018 kb on - strand, within Echvi_1357at 1564.018 kb on - strand, within Echvi_1357at 1564.107 kb on + strand, within Echvi_1357at 1564.110 kb on + strand, within Echvi_1357at 1564.124 kb on + strand, within Echvi_1357at 1564.125 kb on - strand, within Echvi_1357at 1564.125 kb on - strand, within Echvi_1357at 1564.134 kb on + strand, within Echvi_1357at 1564.163 kb on - strand, within Echvi_1357at 1564.193 kb on - strand, within Echvi_1357at 1564.241 kb on + strand, within Echvi_1357at 1564.242 kb on - strand, within Echvi_1357at 1564.242 kb on - strand, within Echvi_1357at 1564.242 kb on - strand, within Echvi_1357at 1564.242 kb on - strand, within Echvi_1357at 1564.242 kb on - strand, within Echvi_1357at 1564.321 kb on + strand, within Echvi_1357at 1564.321 kb on + strand, within Echvi_1357at 1564.321 kb on + strand, within Echvi_1357at 1564.322 kb on - strand, within Echvi_1357at 1564.322 kb on - strand, within Echvi_1357at 1564.322 kb on - strand, within Echvi_1357at 1564.322 kb on - strand, within Echvi_1357at 1564.323 kb on + strand, within Echvi_1357at 1564.323 kb on + strand, within Echvi_1357at 1564.324 kb on - strand, within Echvi_1357at 1564.325 kb on + strand, within Echvi_1357at 1564.325 kb on + strand, within Echvi_1357at 1564.325 kb on + strand, within Echvi_1357at 1564.325 kb on + strand, within Echvi_1357at 1564.326 kb on - strand, within Echvi_1357at 1564.326 kb on - strand, within Echvi_1357at 1564.326 kb on - strand, within Echvi_1357at 1564.364 kb on - strand, within Echvi_1357at 1564.372 kb on + strand, within Echvi_1357at 1564.403 kb on - strand, within Echvi_1357at 1564.445 kb on + strandat 1564.445 kb on + strandat 1564.463 kb on - strandat 1564.468 kb on + strandat 1564.637 kb on - strand, within Echvi_1358at 1564.663 kb on + strand, within Echvi_1358at 1564.664 kb on - strand, within Echvi_1358at 1564.697 kb on + strand, within Echvi_1358at 1564.697 kb on + strand, within Echvi_1358at 1564.698 kb on - strand, within Echvi_1358at 1564.699 kb on + strand, within Echvi_1358at 1564.756 kb on + strand, within Echvi_1358at 1564.757 kb on - strand, within Echvi_1358at 1564.757 kb on - strand, within Echvi_1358at 1564.846 kb on + strand, within Echvi_1358at 1564.867 kb on + strand, within Echvi_1358at 1564.873 kb on + strand, within Echvi_1358at 1564.873 kb on + strand, within Echvi_1358at 1564.890 kb on + strand, within Echvi_1358at 1564.890 kb on + strand, within Echvi_1358at 1565.053 kb on + strand, within Echvi_1358at 1565.097 kb on + strand, within Echvi_1358at 1565.097 kb on + strand, within Echvi_1358at 1565.097 kb on + strand, within Echvi_1358at 1565.097 kb on + strand, within Echvi_1358at 1565.097 kb on + strand, within Echvi_1358at 1565.097 kb on + strand, within Echvi_1358at 1565.098 kb on - strand, within Echvi_1358at 1565.098 kb on - strand, within Echvi_1358at 1565.098 kb on - strand, within Echvi_1358at 1565.182 kb on + strand, within Echvi_1358at 1565.213 kb on + strand, within Echvi_1358at 1565.220 kb on + strand, within Echvi_1358at 1565.221 kb on - strand, within Echvi_1358at 1565.275 kb on - strand, within Echvi_1358at 1565.318 kb on - strand, within Echvi_1358at 1565.349 kb on + strand, within Echvi_1358at 1565.551 kb on + strand, within Echvi_1359at 1565.570 kb on + strand, within Echvi_1359at 1565.570 kb on + strand, within Echvi_1359at 1565.570 kb on + strand, within Echvi_1359at 1565.571 kb on - strand, within Echvi_1359at 1565.572 kb on + strand, within Echvi_1359at 1565.572 kb on + strand, within Echvi_1359at 1565.572 kb on + strand, within Echvi_1359at 1565.573 kb on - strand, within Echvi_1359at 1565.671 kb on - strand, within Echvi_1359at 1565.685 kb on - strand, within Echvi_1359at 1565.687 kb on - strand, within Echvi_1359at 1565.687 kb on - strand, within Echvi_1359at 1565.760 kb on - strand, within Echvi_1359at 1565.773 kb on - strand, within Echvi_1359at 1565.773 kb on - strand, within Echvi_1359at 1565.808 kb on - strand, within Echvi_1359at 1565.870 kb on + strand, within Echvi_1359at 1565.870 kb on + strand, within Echvi_1359at 1565.871 kb on - strand, within Echvi_1359at 1565.871 kb on - strand, within Echvi_1359at 1565.871 kb on - strand, within Echvi_1359at 1565.904 kb on - strand, within Echvi_1359at 1565.933 kb on + strand, within Echvi_1359at 1565.933 kb on + strand, within Echvi_1359at 1565.934 kb on - strand, within Echvi_1359at 1565.934 kb on - strand, within Echvi_1359at 1566.087 kb on + strandat 1566.088 kb on - strandat 1566.099 kb on - strandat 1566.099 kb on - strandat 1566.161 kb on - strand, within Echvi_1360at 1566.180 kb on + strand, within Echvi_1360at 1566.199 kb on + strand, within Echvi_1360at 1566.205 kb on + strand, within Echvi_1360at 1566.205 kb on + strand, within Echvi_1360at 1566.205 kb on + strand, within Echvi_1360at 1566.206 kb on - strand, within Echvi_1360at 1566.206 kb on - strand, within Echvi_1360at 1566.206 kb on - strand, within Echvi_1360at 1566.206 kb on - strand, within Echvi_1360at 1566.265 kb on + strand, within Echvi_1360at 1566.394 kb on - strand, within Echvi_1360at 1566.394 kb on - strand, within Echvi_1360at 1566.400 kb on + strand, within Echvi_1360at 1566.400 kb on + strand, within Echvi_1360at 1566.402 kb on + strand, within Echvi_1360at 1566.402 kb on + strand, within Echvi_1360at 1566.402 kb on + strand, within Echvi_1360at 1566.402 kb on + strand, within Echvi_1360at 1566.402 kb on + strand, within Echvi_1360at 1566.402 kb on + strand, within Echvi_1360at 1566.402 kb on + strand, within Echvi_1360at 1566.403 kb on - strand, within Echvi_1360at 1566.403 kb on - strand, within Echvi_1360at 1566.403 kb on - strand, within Echvi_1360at 1566.403 kb on - strand, within Echvi_1360at 1566.403 kb on - strand, within Echvi_1360at 1566.403 kb on - strand, within Echvi_1360at 1566.403 kb on - strand, within Echvi_1360at 1566.403 kb on - strand, within Echvi_1360at 1566.403 kb on - strand, within Echvi_1360

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
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1,563,609 + -0.5
1,563,609 + +0.9
1,563,609 + -0.4
1,563,610 - -1.2
1,563,628 + Echvi_1356 0.13 +0.1
1,563,683 + Echvi_1356 0.34 -0.3
1,563,707 + Echvi_1356 0.43 +1.6
1,563,708 - Echvi_1356 0.44 -0.3
1,564,014 + Echvi_1357 0.26 -0.6
1,564,017 + Echvi_1357 0.27 +0.7
1,564,018 - Echvi_1357 0.27 -1.9
1,564,018 - Echvi_1357 0.27 +0.6
1,564,018 - Echvi_1357 0.27 -1.2
1,564,107 + Echvi_1357 0.41 -1.3
1,564,110 + Echvi_1357 0.42 -1.0
1,564,124 + Echvi_1357 0.44 -0.7
1,564,125 - Echvi_1357 0.44 -0.3
1,564,125 - Echvi_1357 0.44 +0.6
1,564,134 + Echvi_1357 0.46 +1.0
1,564,163 - Echvi_1357 0.50 +0.4
1,564,193 - Echvi_1357 0.55 -0.7
1,564,241 + Echvi_1357 0.63 +1.4
1,564,242 - Echvi_1357 0.63 -2.0
1,564,242 - Echvi_1357 0.63 +2.5
1,564,242 - Echvi_1357 0.63 +0.1
1,564,242 - Echvi_1357 0.63 +2.6
1,564,242 - Echvi_1357 0.63 -0.5
1,564,321 + Echvi_1357 0.76 -0.2
1,564,321 + Echvi_1357 0.76 +0.9
1,564,321 + Echvi_1357 0.76 +0.3
1,564,322 - Echvi_1357 0.76 +2.1
1,564,322 - Echvi_1357 0.76 -0.4
1,564,322 - Echvi_1357 0.76 -0.8
1,564,322 - Echvi_1357 0.76 -2.5
1,564,323 + Echvi_1357 0.76 -0.2
1,564,323 + Echvi_1357 0.76 -1.0
1,564,324 - Echvi_1357 0.77 +1.1
1,564,325 + Echvi_1357 0.77 +0.2
1,564,325 + Echvi_1357 0.77 +0.6
1,564,325 + Echvi_1357 0.77 +0.4
1,564,325 + Echvi_1357 0.77 +0.3
1,564,326 - Echvi_1357 0.77 +0.1
1,564,326 - Echvi_1357 0.77 -1.7
1,564,326 - Echvi_1357 0.77 +1.3
1,564,364 - Echvi_1357 0.83 +2.1
1,564,372 + Echvi_1357 0.84 -0.2
1,564,403 - Echvi_1357 0.89 -1.6
1,564,445 + +0.4
1,564,445 + +0.6
1,564,463 - +0.7
1,564,468 + +1.1
1,564,637 - Echvi_1358 0.17 -2.2
1,564,663 + Echvi_1358 0.20 -1.5
1,564,664 - Echvi_1358 0.20 -0.9
1,564,697 + Echvi_1358 0.23 +0.1
1,564,697 + Echvi_1358 0.23 -0.8
1,564,698 - Echvi_1358 0.23 -1.4
1,564,699 + Echvi_1358 0.23 +0.5
1,564,756 + Echvi_1358 0.29 +1.1
1,564,757 - Echvi_1358 0.29 -0.2
1,564,757 - Echvi_1358 0.29 -0.2
1,564,846 + Echvi_1358 0.38 +0.1
1,564,867 + Echvi_1358 0.40 -0.7
1,564,873 + Echvi_1358 0.41 +0.3
1,564,873 + Echvi_1358 0.41 -1.4
1,564,890 + Echvi_1358 0.43 -0.7
1,564,890 + Echvi_1358 0.43 +0.4
1,565,053 + Echvi_1358 0.59 +0.5
1,565,097 + Echvi_1358 0.64 +0.2
1,565,097 + Echvi_1358 0.64 -1.0
1,565,097 + Echvi_1358 0.64 +0.7
1,565,097 + Echvi_1358 0.64 +0.1
1,565,097 + Echvi_1358 0.64 +0.2
1,565,097 + Echvi_1358 0.64 -0.2
1,565,098 - Echvi_1358 0.64 -0.4
1,565,098 - Echvi_1358 0.64 -0.9
1,565,098 - Echvi_1358 0.64 -0.9
1,565,182 + Echvi_1358 0.73 +0.1
1,565,213 + Echvi_1358 0.76 -0.7
1,565,220 + Echvi_1358 0.76 +1.7
1,565,221 - Echvi_1358 0.77 -1.0
1,565,275 - Echvi_1358 0.82 +0.0
1,565,318 - Echvi_1358 0.87 -1.0
1,565,349 + Echvi_1358 0.90 -1.6
1,565,551 + Echvi_1359 0.16 +1.3
1,565,570 + Echvi_1359 0.19 +0.6
1,565,570 + Echvi_1359 0.19 +0.2
1,565,570 + Echvi_1359 0.19 -1.0
1,565,571 - Echvi_1359 0.20 -0.1
1,565,572 + Echvi_1359 0.20 +1.1
1,565,572 + Echvi_1359 0.20 +0.2
1,565,572 + Echvi_1359 0.20 -0.4
1,565,573 - Echvi_1359 0.20 -0.2
1,565,671 - Echvi_1359 0.35 +0.6
1,565,685 - Echvi_1359 0.37 +0.1
1,565,687 - Echvi_1359 0.38 -0.9
1,565,687 - Echvi_1359 0.38 +0.1
1,565,760 - Echvi_1359 0.49 +0.3
1,565,773 - Echvi_1359 0.51 +0.0
1,565,773 - Echvi_1359 0.51 -0.2
1,565,808 - Echvi_1359 0.57 -2.1
1,565,870 + Echvi_1359 0.66 +2.6
1,565,870 + Echvi_1359 0.66 -1.0
1,565,871 - Echvi_1359 0.67 -1.2
1,565,871 - Echvi_1359 0.67 +0.7
1,565,871 - Echvi_1359 0.67 +0.0
1,565,904 - Echvi_1359 0.72 +0.3
1,565,933 + Echvi_1359 0.76 -0.7
1,565,933 + Echvi_1359 0.76 -1.6
1,565,934 - Echvi_1359 0.76 +0.4
1,565,934 - Echvi_1359 0.76 -1.0
1,566,087 + -1.2
1,566,088 - +0.9
1,566,099 - -0.2
1,566,099 - +2.1
1,566,161 - Echvi_1360 0.14 -1.0
1,566,180 + Echvi_1360 0.17 -0.5
1,566,199 + Echvi_1360 0.20 -0.3
1,566,205 + Echvi_1360 0.21 -0.7
1,566,205 + Echvi_1360 0.21 -0.8
1,566,205 + Echvi_1360 0.21 +0.6
1,566,206 - Echvi_1360 0.21 -0.1
1,566,206 - Echvi_1360 0.21 +0.1
1,566,206 - Echvi_1360 0.21 +0.8
1,566,206 - Echvi_1360 0.21 +0.8
1,566,265 + Echvi_1360 0.30 -0.7
1,566,394 - Echvi_1360 0.50 +0.1
1,566,394 - Echvi_1360 0.50 -0.8
1,566,400 + Echvi_1360 0.51 -1.6
1,566,400 + Echvi_1360 0.51 -0.3
1,566,402 + Echvi_1360 0.51 +1.4
1,566,402 + Echvi_1360 0.51 +1.1
1,566,402 + Echvi_1360 0.51 -0.9
1,566,402 + Echvi_1360 0.51 -0.9
1,566,402 + Echvi_1360 0.51 +0.0
1,566,402 + Echvi_1360 0.51 +0.1
1,566,402 + Echvi_1360 0.51 +1.1
1,566,403 - Echvi_1360 0.51 +1.5
1,566,403 - Echvi_1360 0.51 +0.6
1,566,403 - Echvi_1360 0.51 +0.4
1,566,403 - Echvi_1360 0.51 -0.3
1,566,403 - Echvi_1360 0.51 -0.7
1,566,403 - Echvi_1360 0.51 -0.8
1,566,403 - Echvi_1360 0.51 +0.6
1,566,403 - Echvi_1360 0.51 -0.4
1,566,403 - Echvi_1360 0.51 +1.1

Or see this region's nucleotide sequence