Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_21020

Experiment: m.b. benzoic 0.58 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_21005 and CA264_21010 are separated by 17 nucleotidesCA264_21010 and CA264_21015 are separated by 85 nucleotidesCA264_21015 and CA264_21020 overlap by 14 nucleotidesCA264_21020 and CA264_21025 are separated by 1 nucleotidesCA264_21025 and CA264_21030 are separated by 35 nucleotides CA264_21005: CA264_21005 - plasmid transfer protein, at 63,205 to 64,200 _21005 CA264_21010: CA264_21010 - conjugative transposon protein TraK, at 64,218 to 64,826 _21010 CA264_21015: CA264_21015 - hypothetical protein, at 64,912 to 65,190 _21015 CA264_21020: CA264_21020 - conjugative transposon protein TraM, at 65,177 to 66,355 _21020 CA264_21025: CA264_21025 - conjugative transposon protein TraN, at 66,357 to 67,145 _21025 CA264_21030: CA264_21030 - hypothetical protein, at 67,181 to 67,600 _21030 Position (kb) 65 66 67Strain fitness (log2 ratio) -2 -1 0 1 2at 64.218 kb on - strandat 64.222 kb on + strandat 64.226 kb on + strandat 64.265 kb on + strandat 64.277 kb on + strandat 64.278 kb on - strandat 64.278 kb on - strandat 64.292 kb on + strand, within CA264_21010at 64.297 kb on + strand, within CA264_21010at 64.298 kb on - strand, within CA264_21010at 64.423 kb on - strand, within CA264_21010at 64.440 kb on - strand, within CA264_21010at 64.440 kb on - strand, within CA264_21010at 64.482 kb on + strand, within CA264_21010at 64.482 kb on + strand, within CA264_21010at 64.482 kb on + strand, within CA264_21010at 64.483 kb on - strand, within CA264_21010at 64.483 kb on - strand, within CA264_21010at 64.493 kb on + strand, within CA264_21010at 64.569 kb on + strand, within CA264_21010at 64.569 kb on + strand, within CA264_21010at 64.647 kb on - strand, within CA264_21010at 64.653 kb on + strand, within CA264_21010at 64.766 kb on - strandat 64.803 kb on + strandat 64.831 kb on - strandat 64.876 kb on + strandat 64.877 kb on - strandat 64.923 kb on - strandat 64.946 kb on + strand, within CA264_21015at 64.946 kb on + strand, within CA264_21015at 64.978 kb on + strand, within CA264_21015at 64.979 kb on - strand, within CA264_21015at 64.979 kb on - strand, within CA264_21015at 64.979 kb on - strand, within CA264_21015at 65.016 kb on + strand, within CA264_21015at 65.061 kb on + strand, within CA264_21015at 65.061 kb on + strand, within CA264_21015at 65.062 kb on - strand, within CA264_21015at 65.083 kb on + strand, within CA264_21015at 65.083 kb on + strand, within CA264_21015at 65.084 kb on - strand, within CA264_21015at 65.148 kb on + strand, within CA264_21015at 65.226 kb on + strandat 65.227 kb on - strandat 65.252 kb on + strandat 65.252 kb on + strandat 65.253 kb on - strandat 65.253 kb on - strandat 65.253 kb on - strandat 65.253 kb on - strandat 65.329 kb on + strand, within CA264_21020at 65.330 kb on - strand, within CA264_21020at 65.330 kb on - strand, within CA264_21020at 65.374 kb on + strand, within CA264_21020at 65.402 kb on - strand, within CA264_21020at 65.407 kb on + strand, within CA264_21020at 65.417 kb on + strand, within CA264_21020at 65.417 kb on + strand, within CA264_21020at 65.557 kb on + strand, within CA264_21020at 65.601 kb on - strand, within CA264_21020at 65.666 kb on + strand, within CA264_21020at 65.667 kb on - strand, within CA264_21020at 65.834 kb on - strand, within CA264_21020at 65.893 kb on + strand, within CA264_21020at 65.894 kb on - strand, within CA264_21020at 65.894 kb on - strand, within CA264_21020at 65.894 kb on - strand, within CA264_21020at 65.960 kb on + strand, within CA264_21020at 65.960 kb on + strand, within CA264_21020at 65.960 kb on + strand, within CA264_21020at 65.960 kb on + strand, within CA264_21020at 65.961 kb on - strand, within CA264_21020at 65.961 kb on - strand, within CA264_21020at 65.961 kb on - strand, within CA264_21020at 65.961 kb on - strand, within CA264_21020at 65.979 kb on + strand, within CA264_21020at 65.993 kb on + strand, within CA264_21020at 65.999 kb on + strand, within CA264_21020at 66.019 kb on + strand, within CA264_21020at 66.019 kb on + strand, within CA264_21020at 66.019 kb on + strand, within CA264_21020at 66.052 kb on + strand, within CA264_21020at 66.052 kb on + strand, within CA264_21020at 66.052 kb on + strand, within CA264_21020at 66.060 kb on - strand, within CA264_21020at 66.091 kb on + strand, within CA264_21020at 66.096 kb on - strand, within CA264_21020at 66.122 kb on + strand, within CA264_21020at 66.122 kb on + strand, within CA264_21020at 66.122 kb on + strand, within CA264_21020at 66.123 kb on - strand, within CA264_21020at 66.234 kb on - strand, within CA264_21020at 66.234 kb on - strand, within CA264_21020at 66.234 kb on - strand, within CA264_21020at 66.304 kb on + strandat 66.329 kb on + strandat 66.329 kb on + strandat 66.330 kb on - strandat 66.340 kb on + strandat 66.343 kb on + strandat 66.354 kb on - strandat 66.367 kb on + strandat 66.376 kb on + strandat 66.376 kb on + strandat 66.376 kb on + strandat 66.377 kb on - strandat 66.378 kb on + strandat 66.379 kb on - strandat 66.431 kb on - strandat 66.431 kb on - strandat 66.431 kb on - strandat 66.431 kb on - strandat 66.481 kb on + strand, within CA264_21025at 66.486 kb on + strand, within CA264_21025at 66.486 kb on + strand, within CA264_21025at 66.487 kb on - strand, within CA264_21025at 66.487 kb on - strand, within CA264_21025at 66.490 kb on + strand, within CA264_21025at 66.490 kb on + strand, within CA264_21025at 66.490 kb on + strand, within CA264_21025at 66.490 kb on + strand, within CA264_21025at 66.490 kb on + strand, within CA264_21025at 66.491 kb on - strand, within CA264_21025at 66.491 kb on - strand, within CA264_21025at 66.491 kb on - strand, within CA264_21025at 66.491 kb on - strand, within CA264_21025at 66.491 kb on - strand, within CA264_21025at 66.494 kb on + strand, within CA264_21025at 66.495 kb on - strand, within CA264_21025at 66.523 kb on + strand, within CA264_21025at 66.524 kb on - strand, within CA264_21025at 66.524 kb on - strand, within CA264_21025at 66.579 kb on - strand, within CA264_21025at 66.582 kb on - strand, within CA264_21025at 66.582 kb on - strand, within CA264_21025at 66.615 kb on + strand, within CA264_21025at 66.617 kb on + strand, within CA264_21025at 66.617 kb on + strand, within CA264_21025at 66.617 kb on + strand, within CA264_21025at 66.617 kb on + strand, within CA264_21025at 66.618 kb on - strand, within CA264_21025at 66.618 kb on - strand, within CA264_21025at 66.618 kb on - strand, within CA264_21025at 66.618 kb on - strand, within CA264_21025at 66.627 kb on + strand, within CA264_21025at 66.663 kb on - strand, within CA264_21025at 66.664 kb on + strand, within CA264_21025at 66.665 kb on - strand, within CA264_21025at 66.771 kb on - strand, within CA264_21025at 66.771 kb on - strand, within CA264_21025at 66.819 kb on + strand, within CA264_21025at 66.819 kb on + strand, within CA264_21025at 66.819 kb on + strand, within CA264_21025at 66.819 kb on + strand, within CA264_21025at 66.820 kb on - strand, within CA264_21025at 66.820 kb on - strand, within CA264_21025at 66.822 kb on - strand, within CA264_21025at 66.851 kb on - strand, within CA264_21025at 66.857 kb on + strand, within CA264_21025at 66.881 kb on + strand, within CA264_21025at 67.114 kb on - strandat 67.141 kb on + strandat 67.142 kb on - strandat 67.176 kb on + strandat 67.181 kb on - strandat 67.209 kb on - strandat 67.293 kb on - strand, within CA264_21030at 67.322 kb on + strand, within CA264_21030at 67.325 kb on - strand, within CA264_21030

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.58 mg/ml
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64,218 - -0.3
64,222 + +1.5
64,226 + -0.7
64,265 + -0.6
64,277 + +0.2
64,278 - -0.0
64,278 - -0.1
64,292 + CA264_21010 0.12 -0.7
64,297 + CA264_21010 0.13 -1.8
64,298 - CA264_21010 0.13 -0.0
64,423 - CA264_21010 0.34 -0.4
64,440 - CA264_21010 0.36 -2.1
64,440 - CA264_21010 0.36 -0.3
64,482 + CA264_21010 0.43 -0.3
64,482 + CA264_21010 0.43 -0.9
64,482 + CA264_21010 0.43 +0.5
64,483 - CA264_21010 0.44 +0.8
64,483 - CA264_21010 0.44 +0.6
64,493 + CA264_21010 0.45 +0.8
64,569 + CA264_21010 0.58 -0.2
64,569 + CA264_21010 0.58 -0.3
64,647 - CA264_21010 0.70 -0.1
64,653 + CA264_21010 0.71 -1.3
64,766 - -1.3
64,803 + -0.2
64,831 - -0.4
64,876 + +0.1
64,877 - -0.1
64,923 - +0.6
64,946 + CA264_21015 0.12 +0.1
64,946 + CA264_21015 0.12 +0.0
64,978 + CA264_21015 0.24 -0.2
64,979 - CA264_21015 0.24 +0.8
64,979 - CA264_21015 0.24 +0.2
64,979 - CA264_21015 0.24 -0.3
65,016 + CA264_21015 0.37 -0.4
65,061 + CA264_21015 0.53 -0.5
65,061 + CA264_21015 0.53 -1.3
65,062 - CA264_21015 0.54 -1.8
65,083 + CA264_21015 0.61 +0.4
65,083 + CA264_21015 0.61 -0.3
65,084 - CA264_21015 0.62 +0.9
65,148 + CA264_21015 0.85 -0.2
65,226 + +1.0
65,227 - -0.2
65,252 + -0.8
65,252 + +0.1
65,253 - +1.8
65,253 - -0.2
65,253 - -0.7
65,253 - +2.0
65,329 + CA264_21020 0.13 +0.9
65,330 - CA264_21020 0.13 +0.2
65,330 - CA264_21020 0.13 +0.2
65,374 + CA264_21020 0.17 -0.4
65,402 - CA264_21020 0.19 -1.1
65,407 + CA264_21020 0.20 +0.7
65,417 + CA264_21020 0.20 +0.1
65,417 + CA264_21020 0.20 -0.0
65,557 + CA264_21020 0.32 -0.1
65,601 - CA264_21020 0.36 +0.4
65,666 + CA264_21020 0.41 -0.4
65,667 - CA264_21020 0.42 +1.0
65,834 - CA264_21020 0.56 +1.5
65,893 + CA264_21020 0.61 +1.2
65,894 - CA264_21020 0.61 -1.4
65,894 - CA264_21020 0.61 +0.1
65,894 - CA264_21020 0.61 -1.2
65,960 + CA264_21020 0.66 +0.7
65,960 + CA264_21020 0.66 +2.6
65,960 + CA264_21020 0.66 +0.8
65,960 + CA264_21020 0.66 -0.8
65,961 - CA264_21020 0.66 -0.1
65,961 - CA264_21020 0.66 -1.5
65,961 - CA264_21020 0.66 -0.1
65,961 - CA264_21020 0.66 +2.6
65,979 + CA264_21020 0.68 +0.5
65,993 + CA264_21020 0.69 -1.3
65,999 + CA264_21020 0.70 -0.3
66,019 + CA264_21020 0.71 +0.3
66,019 + CA264_21020 0.71 +0.3
66,019 + CA264_21020 0.71 +1.1
66,052 + CA264_21020 0.74 -0.3
66,052 + CA264_21020 0.74 -1.1
66,052 + CA264_21020 0.74 +0.6
66,060 - CA264_21020 0.75 +0.7
66,091 + CA264_21020 0.78 -0.4
66,096 - CA264_21020 0.78 +0.5
66,122 + CA264_21020 0.80 -0.5
66,122 + CA264_21020 0.80 -0.1
66,122 + CA264_21020 0.80 +0.3
66,123 - CA264_21020 0.80 +0.5
66,234 - CA264_21020 0.90 -0.0
66,234 - CA264_21020 0.90 +0.1
66,234 - CA264_21020 0.90 +0.6
66,304 + -0.0
66,329 + -0.3
66,329 + -0.5
66,330 - +0.6
66,340 + +1.8
66,343 + +0.3
66,354 - -0.9
66,367 + -2.1
66,376 + -0.5
66,376 + -0.3
66,376 + -0.6
66,377 - -0.1
66,378 + +0.0
66,379 - +0.1
66,431 - +0.5
66,431 - -0.5
66,431 - +0.6
66,431 - -0.1
66,481 + CA264_21025 0.16 -0.4
66,486 + CA264_21025 0.16 -0.3
66,486 + CA264_21025 0.16 -1.9
66,487 - CA264_21025 0.16 +0.6
66,487 - CA264_21025 0.16 +0.2
66,490 + CA264_21025 0.17 -0.1
66,490 + CA264_21025 0.17 +0.3
66,490 + CA264_21025 0.17 -0.1
66,490 + CA264_21025 0.17 -0.5
66,490 + CA264_21025 0.17 +0.2
66,491 - CA264_21025 0.17 +0.6
66,491 - CA264_21025 0.17 -0.0
66,491 - CA264_21025 0.17 +0.0
66,491 - CA264_21025 0.17 -0.5
66,491 - CA264_21025 0.17 -0.4
66,494 + CA264_21025 0.17 -0.1
66,495 - CA264_21025 0.17 +2.0
66,523 + CA264_21025 0.21 +0.3
66,524 - CA264_21025 0.21 -0.1
66,524 - CA264_21025 0.21 +0.4
66,579 - CA264_21025 0.28 +0.0
66,582 - CA264_21025 0.29 +0.8
66,582 - CA264_21025 0.29 -0.1
66,615 + CA264_21025 0.33 -0.2
66,617 + CA264_21025 0.33 -0.5
66,617 + CA264_21025 0.33 +0.1
66,617 + CA264_21025 0.33 -0.4
66,617 + CA264_21025 0.33 -0.2
66,618 - CA264_21025 0.33 +0.7
66,618 - CA264_21025 0.33 +0.8
66,618 - CA264_21025 0.33 -0.1
66,618 - CA264_21025 0.33 +1.2
66,627 + CA264_21025 0.34 +0.3
66,663 - CA264_21025 0.39 +0.5
66,664 + CA264_21025 0.39 +0.6
66,665 - CA264_21025 0.39 +0.0
66,771 - CA264_21025 0.52 +0.0
66,771 - CA264_21025 0.52 -0.0
66,819 + CA264_21025 0.59 -0.1
66,819 + CA264_21025 0.59 -0.9
66,819 + CA264_21025 0.59 +0.5
66,819 + CA264_21025 0.59 -0.2
66,820 - CA264_21025 0.59 -0.4
66,820 - CA264_21025 0.59 +0.4
66,822 - CA264_21025 0.59 +0.3
66,851 - CA264_21025 0.63 +0.4
66,857 + CA264_21025 0.63 -0.2
66,881 + CA264_21025 0.66 +0.1
67,114 - +0.1
67,141 + +1.0
67,142 - +0.1
67,176 + +0.6
67,181 - -0.3
67,209 - +0.2
67,293 - CA264_21030 0.27 -1.1
67,322 + CA264_21030 0.34 -0.1
67,325 - CA264_21030 0.34 +0.5

Or see this region's nucleotide sequence