Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18340

Experiment: m.b. benzoic 0.58 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_18335 and CA264_18340 are separated by 259 nucleotidesCA264_18340 and CA264_18345 are separated by 87 nucleotidesCA264_18345 and CA264_18350 are separated by 76 nucleotidesCA264_18350 and CA264_18355 are separated by 20 nucleotides CA264_18335: CA264_18335 - peptidase M16, at 4,262,099 to 4,263,358 _18335 CA264_18340: CA264_18340 - dehydrogenase, at 4,263,618 to 4,265,597 _18340 CA264_18345: CA264_18345 - hypothetical protein, at 4,265,685 to 4,265,894 _18345 CA264_18350: CA264_18350 - hypothetical protein, at 4,265,971 to 4,266,297 _18350 CA264_18355: CA264_18355 - thioredoxin family protein, at 4,266,318 to 4,266,659 _18355 Position (kb) 4263 4264 4265 4266Strain fitness (log2 ratio) -2 -1 0 1 2at 4262.620 kb on - strand, within CA264_18335at 4262.628 kb on + strand, within CA264_18335at 4262.628 kb on + strand, within CA264_18335at 4262.629 kb on - strand, within CA264_18335at 4262.629 kb on - strand, within CA264_18335at 4262.657 kb on + strand, within CA264_18335at 4262.657 kb on + strand, within CA264_18335at 4262.713 kb on - strand, within CA264_18335at 4262.713 kb on - strand, within CA264_18335at 4262.713 kb on - strand, within CA264_18335at 4262.799 kb on - strand, within CA264_18335at 4262.817 kb on + strand, within CA264_18335at 4262.818 kb on - strand, within CA264_18335at 4262.867 kb on - strand, within CA264_18335at 4262.902 kb on - strand, within CA264_18335at 4262.916 kb on + strand, within CA264_18335at 4262.917 kb on - strand, within CA264_18335at 4262.917 kb on - strand, within CA264_18335at 4262.967 kb on + strand, within CA264_18335at 4262.993 kb on + strand, within CA264_18335at 4263.043 kb on + strand, within CA264_18335at 4263.044 kb on - strand, within CA264_18335at 4263.102 kb on + strand, within CA264_18335at 4263.103 kb on - strand, within CA264_18335at 4263.103 kb on - strand, within CA264_18335at 4263.264 kb on + strandat 4263.269 kb on + strandat 4263.270 kb on - strandat 4263.328 kb on + strandat 4263.329 kb on - strandat 4263.354 kb on - strandat 4263.359 kb on - strandat 4263.359 kb on - strandat 4263.365 kb on + strandat 4263.366 kb on - strandat 4263.383 kb on + strandat 4263.383 kb on + strandat 4263.383 kb on + strandat 4263.383 kb on + strandat 4263.383 kb on + strandat 4263.383 kb on + strandat 4263.383 kb on + strandat 4263.384 kb on - strandat 4263.384 kb on - strandat 4263.384 kb on - strandat 4263.384 kb on - strandat 4263.384 kb on - strandat 4263.387 kb on + strandat 4263.388 kb on - strandat 4263.436 kb on + strandat 4263.436 kb on + strandat 4263.459 kb on - strandat 4263.461 kb on - strandat 4263.482 kb on + strandat 4263.509 kb on + strandat 4263.516 kb on + strandat 4263.516 kb on + strandat 4263.516 kb on + strandat 4263.517 kb on - strandat 4263.517 kb on - strandat 4263.547 kb on + strandat 4263.553 kb on + strandat 4263.555 kb on + strandat 4263.566 kb on + strandat 4263.595 kb on + strandat 4263.595 kb on + strandat 4263.595 kb on + strandat 4263.596 kb on - strandat 4263.624 kb on + strandat 4263.624 kb on + strandat 4263.625 kb on - strandat 4263.625 kb on - strandat 4263.639 kb on + strandat 4263.659 kb on - strandat 4263.664 kb on + strandat 4263.664 kb on + strandat 4263.665 kb on - strandat 4263.666 kb on + strandat 4263.666 kb on + strandat 4263.675 kb on - strandat 4263.807 kb on + strandat 4264.270 kb on - strand, within CA264_18340at 4264.380 kb on + strand, within CA264_18340at 4264.380 kb on + strand, within CA264_18340at 4264.381 kb on - strand, within CA264_18340at 4264.487 kb on + strand, within CA264_18340at 4264.513 kb on + strand, within CA264_18340at 4264.514 kb on - strand, within CA264_18340at 4264.587 kb on + strand, within CA264_18340at 4264.587 kb on + strand, within CA264_18340at 4264.587 kb on + strand, within CA264_18340at 4264.588 kb on - strand, within CA264_18340at 4264.588 kb on - strand, within CA264_18340at 4264.588 kb on - strand, within CA264_18340at 4264.588 kb on - strand, within CA264_18340at 4264.588 kb on - strand, within CA264_18340at 4264.682 kb on + strand, within CA264_18340at 4264.721 kb on + strand, within CA264_18340at 4264.722 kb on - strand, within CA264_18340at 4264.731 kb on + strand, within CA264_18340at 4264.745 kb on + strand, within CA264_18340at 4264.867 kb on + strand, within CA264_18340at 4265.190 kb on + strand, within CA264_18340at 4265.190 kb on + strand, within CA264_18340at 4265.246 kb on + strand, within CA264_18340at 4265.246 kb on + strand, within CA264_18340at 4265.246 kb on + strand, within CA264_18340at 4265.246 kb on + strand, within CA264_18340at 4265.247 kb on - strand, within CA264_18340at 4265.247 kb on - strand, within CA264_18340at 4265.254 kb on - strand, within CA264_18340at 4265.254 kb on - strand, within CA264_18340at 4265.296 kb on + strand, within CA264_18340at 4265.311 kb on + strand, within CA264_18340at 4265.311 kb on + strand, within CA264_18340at 4265.312 kb on - strand, within CA264_18340at 4265.312 kb on - strand, within CA264_18340at 4265.317 kb on + strand, within CA264_18340at 4265.424 kb on - strandat 4265.425 kb on + strandat 4265.593 kb on - strandat 4265.690 kb on + strandat 4265.692 kb on + strandat 4265.711 kb on + strand, within CA264_18345at 4265.711 kb on + strand, within CA264_18345at 4265.893 kb on - strandat 4266.109 kb on + strand, within CA264_18350at 4266.110 kb on - strand, within CA264_18350at 4266.139 kb on + strand, within CA264_18350at 4266.140 kb on - strand, within CA264_18350at 4266.141 kb on + strand, within CA264_18350at 4266.141 kb on + strand, within CA264_18350at 4266.141 kb on + strand, within CA264_18350at 4266.142 kb on - strand, within CA264_18350at 4266.142 kb on - strand, within CA264_18350at 4266.142 kb on - strand, within CA264_18350at 4266.200 kb on - strand, within CA264_18350at 4266.291 kb on + strandat 4266.295 kb on + strandat 4266.398 kb on + strand, within CA264_18355at 4266.399 kb on - strand, within CA264_18355at 4266.399 kb on - strand, within CA264_18355at 4266.420 kb on - strand, within CA264_18355at 4266.490 kb on - strand, within CA264_18355at 4266.551 kb on - strand, within CA264_18355

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.58 mg/ml
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4,262,620 - CA264_18335 0.41 +0.5
4,262,628 + CA264_18335 0.42 +0.2
4,262,628 + CA264_18335 0.42 +0.3
4,262,629 - CA264_18335 0.42 +0.3
4,262,629 - CA264_18335 0.42 +2.0
4,262,657 + CA264_18335 0.44 +0.1
4,262,657 + CA264_18335 0.44 -0.4
4,262,713 - CA264_18335 0.49 +1.9
4,262,713 - CA264_18335 0.49 -1.4
4,262,713 - CA264_18335 0.49 +1.1
4,262,799 - CA264_18335 0.56 -0.0
4,262,817 + CA264_18335 0.57 -0.6
4,262,818 - CA264_18335 0.57 +0.7
4,262,867 - CA264_18335 0.61 -0.7
4,262,902 - CA264_18335 0.64 +1.0
4,262,916 + CA264_18335 0.65 -0.6
4,262,917 - CA264_18335 0.65 +0.5
4,262,917 - CA264_18335 0.65 -0.7
4,262,967 + CA264_18335 0.69 -0.3
4,262,993 + CA264_18335 0.71 -0.9
4,263,043 + CA264_18335 0.75 -0.1
4,263,044 - CA264_18335 0.75 -0.0
4,263,102 + CA264_18335 0.80 -0.8
4,263,103 - CA264_18335 0.80 -0.4
4,263,103 - CA264_18335 0.80 -0.3
4,263,264 + -0.1
4,263,269 + -0.1
4,263,270 - -0.1
4,263,328 + -0.0
4,263,329 - +0.2
4,263,354 - +0.6
4,263,359 - +0.3
4,263,359 - -1.3
4,263,365 + -0.4
4,263,366 - +1.3
4,263,383 + -0.2
4,263,383 + +0.1
4,263,383 + -0.8
4,263,383 + +0.4
4,263,383 + +0.5
4,263,383 + +1.0
4,263,383 + -0.8
4,263,384 - -0.4
4,263,384 - +0.0
4,263,384 - -0.2
4,263,384 - -1.0
4,263,384 - -0.4
4,263,387 + -0.0
4,263,388 - -1.5
4,263,436 + -0.2
4,263,436 + -0.1
4,263,459 - +0.5
4,263,461 - -0.2
4,263,482 + +0.5
4,263,509 + -0.3
4,263,516 + +0.2
4,263,516 + +0.8
4,263,516 + +0.8
4,263,517 - -1.1
4,263,517 - -0.2
4,263,547 + +0.0
4,263,553 + +1.3
4,263,555 + -1.0
4,263,566 + +0.4
4,263,595 + +0.3
4,263,595 + -0.5
4,263,595 + -0.5
4,263,596 - +0.2
4,263,624 + -1.3
4,263,624 + -0.3
4,263,625 - -0.6
4,263,625 - -0.7
4,263,639 + +0.4
4,263,659 - -1.5
4,263,664 + -0.8
4,263,664 + +0.2
4,263,665 - +0.1
4,263,666 + -0.3
4,263,666 + -0.1
4,263,675 - +1.2
4,263,807 + +1.0
4,264,270 - CA264_18340 0.33 -0.9
4,264,380 + CA264_18340 0.38 -0.3
4,264,380 + CA264_18340 0.38 +0.8
4,264,381 - CA264_18340 0.39 +0.0
4,264,487 + CA264_18340 0.44 +1.0
4,264,513 + CA264_18340 0.45 -0.8
4,264,514 - CA264_18340 0.45 -0.8
4,264,587 + CA264_18340 0.49 -0.1
4,264,587 + CA264_18340 0.49 -0.5
4,264,587 + CA264_18340 0.49 +1.4
4,264,588 - CA264_18340 0.49 -1.1
4,264,588 - CA264_18340 0.49 -1.6
4,264,588 - CA264_18340 0.49 +0.5
4,264,588 - CA264_18340 0.49 -0.2
4,264,588 - CA264_18340 0.49 -0.8
4,264,682 + CA264_18340 0.54 -0.2
4,264,721 + CA264_18340 0.56 +0.1
4,264,722 - CA264_18340 0.56 -0.4
4,264,731 + CA264_18340 0.56 +0.3
4,264,745 + CA264_18340 0.57 -0.2
4,264,867 + CA264_18340 0.63 -1.0
4,265,190 + CA264_18340 0.79 -0.4
4,265,190 + CA264_18340 0.79 +1.1
4,265,246 + CA264_18340 0.82 -0.6
4,265,246 + CA264_18340 0.82 -0.4
4,265,246 + CA264_18340 0.82 +0.7
4,265,246 + CA264_18340 0.82 -0.1
4,265,247 - CA264_18340 0.82 -0.7
4,265,247 - CA264_18340 0.82 -0.5
4,265,254 - CA264_18340 0.83 -0.2
4,265,254 - CA264_18340 0.83 -0.6
4,265,296 + CA264_18340 0.85 +0.7
4,265,311 + CA264_18340 0.86 -0.2
4,265,311 + CA264_18340 0.86 -0.7
4,265,312 - CA264_18340 0.86 -0.4
4,265,312 - CA264_18340 0.86 -1.8
4,265,317 + CA264_18340 0.86 -1.3
4,265,424 - +0.3
4,265,425 + +0.3
4,265,593 - -0.5
4,265,690 + +1.0
4,265,692 + +0.1
4,265,711 + CA264_18345 0.12 +0.3
4,265,711 + CA264_18345 0.12 -0.3
4,265,893 - +1.1
4,266,109 + CA264_18350 0.42 +0.2
4,266,110 - CA264_18350 0.43 -0.0
4,266,139 + CA264_18350 0.51 +1.0
4,266,140 - CA264_18350 0.52 -0.3
4,266,141 + CA264_18350 0.52 +0.3
4,266,141 + CA264_18350 0.52 -0.0
4,266,141 + CA264_18350 0.52 -0.5
4,266,142 - CA264_18350 0.52 -0.7
4,266,142 - CA264_18350 0.52 +0.2
4,266,142 - CA264_18350 0.52 +0.1
4,266,200 - CA264_18350 0.70 +2.0
4,266,291 + +0.4
4,266,295 + -0.5
4,266,398 + CA264_18355 0.23 -0.6
4,266,399 - CA264_18355 0.24 +0.2
4,266,399 - CA264_18355 0.24 -0.1
4,266,420 - CA264_18355 0.30 +0.9
4,266,490 - CA264_18355 0.50 +1.3
4,266,551 - CA264_18355 0.68 -0.7

Or see this region's nucleotide sequence