Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_16485

Experiment: m.b. benzoic 0.58 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_16480 and CA264_16485 are separated by 179 nucleotidesCA264_16485 and CA264_16490 are separated by 170 nucleotides CA264_16480: CA264_16480 - oxidoreductase, at 3,831,418 to 3,832,074 _16480 CA264_16485: CA264_16485 - CPBP family intramembrane metalloprotease, at 3,832,254 to 3,832,979 _16485 CA264_16490: CA264_16490 - glucose-1-phosphate thymidylyltransferase, at 3,833,150 to 3,834,151 _16490 Position (kb) 3832 3833Strain fitness (log2 ratio) -2 -1 0 1 2at 3831.265 kb on - strandat 3831.268 kb on + strandat 3831.270 kb on + strandat 3831.310 kb on - strandat 3831.315 kb on + strandat 3831.315 kb on + strandat 3831.315 kb on + strandat 3831.315 kb on + strandat 3831.382 kb on + strandat 3831.388 kb on - strandat 3831.396 kb on + strandat 3831.397 kb on - strandat 3831.399 kb on - strandat 3831.401 kb on + strandat 3831.401 kb on + strandat 3831.401 kb on + strandat 3831.401 kb on + strandat 3831.417 kb on + strandat 3831.467 kb on + strandat 3831.612 kb on + strand, within CA264_16480at 3831.642 kb on + strand, within CA264_16480at 3831.671 kb on + strand, within CA264_16480at 3831.672 kb on - strand, within CA264_16480at 3831.679 kb on - strand, within CA264_16480at 3831.719 kb on - strand, within CA264_16480at 3831.793 kb on + strand, within CA264_16480at 3831.794 kb on - strand, within CA264_16480at 3831.794 kb on - strand, within CA264_16480at 3831.806 kb on + strand, within CA264_16480at 3831.806 kb on + strand, within CA264_16480at 3831.806 kb on + strand, within CA264_16480at 3831.807 kb on - strand, within CA264_16480at 3831.807 kb on - strand, within CA264_16480at 3831.846 kb on + strand, within CA264_16480at 3831.847 kb on - strand, within CA264_16480at 3831.901 kb on + strand, within CA264_16480at 3831.902 kb on - strand, within CA264_16480at 3831.935 kb on + strand, within CA264_16480at 3832.072 kb on + strandat 3832.087 kb on + strandat 3832.087 kb on + strandat 3832.098 kb on + strandat 3832.149 kb on + strandat 3832.150 kb on - strandat 3832.247 kb on + strandat 3832.248 kb on - strandat 3832.299 kb on - strandat 3832.299 kb on - strandat 3832.343 kb on + strand, within CA264_16485at 3832.343 kb on + strand, within CA264_16485at 3832.344 kb on - strand, within CA264_16485at 3832.344 kb on - strand, within CA264_16485at 3832.345 kb on + strand, within CA264_16485at 3832.384 kb on + strand, within CA264_16485at 3832.385 kb on - strand, within CA264_16485at 3832.529 kb on + strand, within CA264_16485at 3832.530 kb on - strand, within CA264_16485at 3832.532 kb on + strand, within CA264_16485at 3832.557 kb on + strand, within CA264_16485at 3832.572 kb on + strand, within CA264_16485at 3832.599 kb on + strand, within CA264_16485at 3832.617 kb on + strand, within CA264_16485at 3832.617 kb on + strand, within CA264_16485at 3832.617 kb on + strand, within CA264_16485at 3832.618 kb on - strand, within CA264_16485at 3832.638 kb on - strand, within CA264_16485at 3832.638 kb on - strand, within CA264_16485at 3832.665 kb on + strand, within CA264_16485at 3832.665 kb on + strand, within CA264_16485at 3832.666 kb on - strand, within CA264_16485at 3832.666 kb on - strand, within CA264_16485at 3832.667 kb on + strand, within CA264_16485at 3832.710 kb on + strand, within CA264_16485at 3832.711 kb on - strand, within CA264_16485at 3832.725 kb on + strand, within CA264_16485at 3832.735 kb on + strand, within CA264_16485at 3832.735 kb on + strand, within CA264_16485at 3832.766 kb on + strand, within CA264_16485at 3832.766 kb on + strand, within CA264_16485at 3832.766 kb on + strand, within CA264_16485at 3832.767 kb on - strand, within CA264_16485at 3832.767 kb on - strand, within CA264_16485at 3832.803 kb on + strand, within CA264_16485at 3832.803 kb on + strand, within CA264_16485at 3832.804 kb on - strand, within CA264_16485at 3832.823 kb on - strand, within CA264_16485at 3832.885 kb on + strand, within CA264_16485at 3832.958 kb on - strandat 3832.984 kb on + strandat 3832.984 kb on + strandat 3832.985 kb on - strandat 3832.985 kb on - strandat 3832.985 kb on - strandat 3832.988 kb on - strandat 3833.037 kb on + strandat 3833.041 kb on + strandat 3833.041 kb on + strandat 3833.043 kb on + strandat 3833.054 kb on - strandat 3833.056 kb on + strandat 3833.056 kb on + strandat 3833.056 kb on + strandat 3833.057 kb on - strandat 3833.057 kb on - strandat 3833.061 kb on - strandat 3833.081 kb on + strandat 3833.089 kb on + strandat 3833.090 kb on - strandat 3833.104 kb on + strandat 3833.104 kb on + strandat 3833.105 kb on - strandat 3833.105 kb on - strandat 3833.126 kb on - strandat 3833.144 kb on + strandat 3833.164 kb on + strandat 3833.268 kb on + strand, within CA264_16490at 3833.268 kb on + strand, within CA264_16490at 3833.398 kb on + strand, within CA264_16490at 3833.399 kb on - strand, within CA264_16490at 3833.399 kb on - strand, within CA264_16490at 3833.421 kb on + strand, within CA264_16490at 3833.787 kb on + strand, within CA264_16490at 3833.788 kb on - strand, within CA264_16490at 3833.789 kb on - strand, within CA264_16490at 3833.800 kb on + strand, within CA264_16490at 3833.804 kb on - strand, within CA264_16490at 3833.817 kb on - strand, within CA264_16490at 3833.842 kb on + strand, within CA264_16490at 3833.855 kb on - strand, within CA264_16490at 3833.855 kb on - strand, within CA264_16490at 3833.868 kb on + strand, within CA264_16490at 3833.869 kb on - strand, within CA264_16490at 3833.940 kb on - strand, within CA264_16490at 3833.940 kb on - strand, within CA264_16490at 3833.965 kb on - strand, within CA264_16490

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.58 mg/ml
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3,831,265 - -0.5
3,831,268 + +0.0
3,831,270 + -0.6
3,831,310 - -2.3
3,831,315 + -1.5
3,831,315 + -0.6
3,831,315 + -0.8
3,831,315 + +1.4
3,831,382 + +0.3
3,831,388 - -0.2
3,831,396 + -0.5
3,831,397 - -1.0
3,831,399 - +0.4
3,831,401 + -0.4
3,831,401 + -0.6
3,831,401 + -0.1
3,831,401 + +0.6
3,831,417 + +2.0
3,831,467 + +1.3
3,831,612 + CA264_16480 0.30 -0.9
3,831,642 + CA264_16480 0.34 -0.5
3,831,671 + CA264_16480 0.39 -0.8
3,831,672 - CA264_16480 0.39 +0.4
3,831,679 - CA264_16480 0.40 -0.4
3,831,719 - CA264_16480 0.46 -0.1
3,831,793 + CA264_16480 0.57 -0.4
3,831,794 - CA264_16480 0.57 -0.4
3,831,794 - CA264_16480 0.57 -0.5
3,831,806 + CA264_16480 0.59 +0.1
3,831,806 + CA264_16480 0.59 +0.3
3,831,806 + CA264_16480 0.59 +1.4
3,831,807 - CA264_16480 0.59 -0.3
3,831,807 - CA264_16480 0.59 +0.5
3,831,846 + CA264_16480 0.65 -0.1
3,831,847 - CA264_16480 0.65 -1.9
3,831,901 + CA264_16480 0.74 +1.5
3,831,902 - CA264_16480 0.74 +0.5
3,831,935 + CA264_16480 0.79 -0.4
3,832,072 + +0.3
3,832,087 + -0.2
3,832,087 + -0.5
3,832,098 + -0.9
3,832,149 + +0.4
3,832,150 - -0.9
3,832,247 + +0.6
3,832,248 - -0.7
3,832,299 - +0.1
3,832,299 - -0.1
3,832,343 + CA264_16485 0.12 +0.1
3,832,343 + CA264_16485 0.12 -2.6
3,832,344 - CA264_16485 0.12 -0.6
3,832,344 - CA264_16485 0.12 +1.1
3,832,345 + CA264_16485 0.13 -0.7
3,832,384 + CA264_16485 0.18 +1.0
3,832,385 - CA264_16485 0.18 -1.1
3,832,529 + CA264_16485 0.38 +1.3
3,832,530 - CA264_16485 0.38 -0.1
3,832,532 + CA264_16485 0.38 -0.4
3,832,557 + CA264_16485 0.42 +0.3
3,832,572 + CA264_16485 0.44 +0.1
3,832,599 + CA264_16485 0.48 +0.1
3,832,617 + CA264_16485 0.50 -0.1
3,832,617 + CA264_16485 0.50 +0.1
3,832,617 + CA264_16485 0.50 -0.4
3,832,618 - CA264_16485 0.50 -0.5
3,832,638 - CA264_16485 0.53 +0.2
3,832,638 - CA264_16485 0.53 +0.5
3,832,665 + CA264_16485 0.57 +0.1
3,832,665 + CA264_16485 0.57 -0.7
3,832,666 - CA264_16485 0.57 +0.7
3,832,666 - CA264_16485 0.57 +0.1
3,832,667 + CA264_16485 0.57 +0.1
3,832,710 + CA264_16485 0.63 +0.0
3,832,711 - CA264_16485 0.63 +0.1
3,832,725 + CA264_16485 0.65 -0.7
3,832,735 + CA264_16485 0.66 -0.1
3,832,735 + CA264_16485 0.66 +0.5
3,832,766 + CA264_16485 0.71 +1.0
3,832,766 + CA264_16485 0.71 -0.2
3,832,766 + CA264_16485 0.71 -0.0
3,832,767 - CA264_16485 0.71 +0.9
3,832,767 - CA264_16485 0.71 -1.4
3,832,803 + CA264_16485 0.76 -0.6
3,832,803 + CA264_16485 0.76 -0.9
3,832,804 - CA264_16485 0.76 +0.2
3,832,823 - CA264_16485 0.78 +0.6
3,832,885 + CA264_16485 0.87 -1.5
3,832,958 - -1.0
3,832,984 + -0.1
3,832,984 + +0.2
3,832,985 - -0.8
3,832,985 - +1.4
3,832,985 - -0.5
3,832,988 - +0.7
3,833,037 + +1.2
3,833,041 + +0.5
3,833,041 + +0.3
3,833,043 + +0.4
3,833,054 - -0.0
3,833,056 + -0.3
3,833,056 + +0.6
3,833,056 + +2.0
3,833,057 - +1.2
3,833,057 - -0.7
3,833,061 - -0.3
3,833,081 + +0.7
3,833,089 + +0.6
3,833,090 - +0.2
3,833,104 + +0.7
3,833,104 + -1.0
3,833,105 - -0.2
3,833,105 - -0.3
3,833,126 - +1.0
3,833,144 + -0.7
3,833,164 + -2.0
3,833,268 + CA264_16490 0.12 +0.4
3,833,268 + CA264_16490 0.12 +0.5
3,833,398 + CA264_16490 0.25 +0.6
3,833,399 - CA264_16490 0.25 +0.7
3,833,399 - CA264_16490 0.25 +1.0
3,833,421 + CA264_16490 0.27 +0.4
3,833,787 + CA264_16490 0.64 +0.2
3,833,788 - CA264_16490 0.64 -0.3
3,833,789 - CA264_16490 0.64 +2.0
3,833,800 + CA264_16490 0.65 -0.1
3,833,804 - CA264_16490 0.65 +1.1
3,833,817 - CA264_16490 0.67 -0.3
3,833,842 + CA264_16490 0.69 -0.8
3,833,855 - CA264_16490 0.70 +1.4
3,833,855 - CA264_16490 0.70 -0.4
3,833,868 + CA264_16490 0.72 -1.1
3,833,869 - CA264_16490 0.72 -0.1
3,833,940 - CA264_16490 0.79 +0.6
3,833,940 - CA264_16490 0.79 -0.5
3,833,965 - CA264_16490 0.81 -0.0

Or see this region's nucleotide sequence