Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13045

Experiment: m.b. benzoic 0.58 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_13040 and CA264_13045 are separated by 55 nucleotidesCA264_13045 and CA264_13050 are separated by 101 nucleotides CA264_13040: CA264_13040 - acriflavin resistance protein, at 3,037,098 to 3,040,205 _13040 CA264_13045: CA264_13045 - transporter, at 3,040,261 to 3,041,607 _13045 CA264_13050: CA264_13050 - hypothetical protein, at 3,041,709 to 3,042,986 _13050 Position (kb) 3040 3041 3042Strain fitness (log2 ratio) -2 -1 0 1 2at 3039.385 kb on - strand, within CA264_13040at 3039.388 kb on + strand, within CA264_13040at 3039.412 kb on + strand, within CA264_13040at 3039.412 kb on + strand, within CA264_13040at 3039.413 kb on - strand, within CA264_13040at 3039.729 kb on - strand, within CA264_13040at 3040.028 kb on + strandat 3040.075 kb on - strandat 3040.075 kb on - strandat 3040.093 kb on - strandat 3040.099 kb on - strandat 3040.204 kb on - strandat 3040.222 kb on + strandat 3040.250 kb on + strandat 3040.251 kb on - strandat 3040.292 kb on + strandat 3040.384 kb on + strandat 3040.384 kb on + strandat 3040.541 kb on + strand, within CA264_13045at 3040.624 kb on + strand, within CA264_13045at 3040.680 kb on - strand, within CA264_13045at 3040.680 kb on - strand, within CA264_13045at 3040.711 kb on + strand, within CA264_13045at 3040.714 kb on + strand, within CA264_13045at 3040.804 kb on + strand, within CA264_13045at 3040.812 kb on - strand, within CA264_13045at 3040.855 kb on + strand, within CA264_13045at 3040.920 kb on - strand, within CA264_13045at 3041.167 kb on + strand, within CA264_13045at 3041.167 kb on + strand, within CA264_13045at 3041.172 kb on + strand, within CA264_13045at 3041.172 kb on + strand, within CA264_13045at 3041.211 kb on + strand, within CA264_13045at 3041.238 kb on + strand, within CA264_13045at 3041.270 kb on + strand, within CA264_13045at 3041.292 kb on - strand, within CA264_13045at 3041.292 kb on - strand, within CA264_13045at 3041.532 kb on + strandat 3041.533 kb on - strandat 3041.533 kb on - strandat 3041.564 kb on + strandat 3041.565 kb on - strandat 3041.633 kb on - strandat 3041.642 kb on + strandat 3041.661 kb on - strandat 3041.662 kb on + strandat 3041.676 kb on + strandat 3041.677 kb on - strandat 3041.677 kb on - strandat 3041.708 kb on + strandat 3041.709 kb on - strandat 3041.753 kb on - strandat 3041.882 kb on - strand, within CA264_13050at 3041.903 kb on - strand, within CA264_13050at 3041.928 kb on + strand, within CA264_13050at 3041.928 kb on + strand, within CA264_13050at 3041.929 kb on - strand, within CA264_13050at 3041.995 kb on - strand, within CA264_13050at 3041.995 kb on - strand, within CA264_13050at 3041.995 kb on - strand, within CA264_13050at 3042.027 kb on - strand, within CA264_13050at 3042.047 kb on - strand, within CA264_13050at 3042.076 kb on + strand, within CA264_13050at 3042.160 kb on + strand, within CA264_13050at 3042.319 kb on + strand, within CA264_13050at 3042.411 kb on - strand, within CA264_13050at 3042.411 kb on - strand, within CA264_13050at 3042.423 kb on - strand, within CA264_13050at 3042.452 kb on + strand, within CA264_13050at 3042.452 kb on + strand, within CA264_13050at 3042.454 kb on + strand, within CA264_13050at 3042.454 kb on + strand, within CA264_13050at 3042.454 kb on + strand, within CA264_13050at 3042.552 kb on + strand, within CA264_13050at 3042.553 kb on - strand, within CA264_13050

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.58 mg/ml
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3,039,385 - CA264_13040 0.74 +0.4
3,039,388 + CA264_13040 0.74 +0.3
3,039,412 + CA264_13040 0.74 +0.2
3,039,412 + CA264_13040 0.74 +0.1
3,039,413 - CA264_13040 0.74 -0.2
3,039,729 - CA264_13040 0.85 -1.7
3,040,028 + +0.2
3,040,075 - +0.5
3,040,075 - +0.1
3,040,093 - -0.6
3,040,099 - -0.3
3,040,204 - +0.0
3,040,222 + -1.0
3,040,250 + +0.2
3,040,251 - -2.0
3,040,292 + +0.2
3,040,384 + -0.1
3,040,384 + +0.2
3,040,541 + CA264_13045 0.21 -0.4
3,040,624 + CA264_13045 0.27 +0.5
3,040,680 - CA264_13045 0.31 +0.8
3,040,680 - CA264_13045 0.31 +0.6
3,040,711 + CA264_13045 0.33 +0.7
3,040,714 + CA264_13045 0.34 -0.1
3,040,804 + CA264_13045 0.40 -0.1
3,040,812 - CA264_13045 0.41 -0.2
3,040,855 + CA264_13045 0.44 +0.4
3,040,920 - CA264_13045 0.49 -0.2
3,041,167 + CA264_13045 0.67 -0.0
3,041,167 + CA264_13045 0.67 +0.7
3,041,172 + CA264_13045 0.68 -0.7
3,041,172 + CA264_13045 0.68 +0.9
3,041,211 + CA264_13045 0.71 +0.1
3,041,238 + CA264_13045 0.73 -0.0
3,041,270 + CA264_13045 0.75 +0.9
3,041,292 - CA264_13045 0.77 -0.2
3,041,292 - CA264_13045 0.77 -0.4
3,041,532 + -0.7
3,041,533 - +0.5
3,041,533 - +2.7
3,041,564 + -0.1
3,041,565 - -0.2
3,041,633 - +0.0
3,041,642 + +1.0
3,041,661 - -0.3
3,041,662 + +0.0
3,041,676 + -0.2
3,041,677 - +0.7
3,041,677 - -1.5
3,041,708 + +0.2
3,041,709 - +0.8
3,041,753 - -0.7
3,041,882 - CA264_13050 0.14 +0.8
3,041,903 - CA264_13050 0.15 -0.7
3,041,928 + CA264_13050 0.17 -0.1
3,041,928 + CA264_13050 0.17 +0.2
3,041,929 - CA264_13050 0.17 -0.3
3,041,995 - CA264_13050 0.22 +0.8
3,041,995 - CA264_13050 0.22 -0.3
3,041,995 - CA264_13050 0.22 -0.8
3,042,027 - CA264_13050 0.25 -0.5
3,042,047 - CA264_13050 0.26 -0.5
3,042,076 + CA264_13050 0.29 +0.2
3,042,160 + CA264_13050 0.35 -0.4
3,042,319 + CA264_13050 0.48 -0.8
3,042,411 - CA264_13050 0.55 +0.3
3,042,411 - CA264_13050 0.55 +0.0
3,042,423 - CA264_13050 0.56 -0.1
3,042,452 + CA264_13050 0.58 +0.1
3,042,452 + CA264_13050 0.58 +0.6
3,042,454 + CA264_13050 0.58 -0.1
3,042,454 + CA264_13050 0.58 +0.3
3,042,454 + CA264_13050 0.58 -0.9
3,042,552 + CA264_13050 0.66 +0.7
3,042,553 - CA264_13050 0.66 +0.0

Or see this region's nucleotide sequence