Experiment: m.b. benzoic 0.58 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_12615 and CA264_12620 are separated by 222 nucleotides CA264_12620 and CA264_12625 are separated by 116 nucleotides CA264_12625 and CA264_12630 are separated by 169 nucleotides
CA264_12615: CA264_12615 - peptidase M16, at 2,943,802 to 2,945,442
_12615
CA264_12620: CA264_12620 - cytochrome C, at 2,945,665 to 2,946,663
_12620
CA264_12625: CA264_12625 - RDD family protein, at 2,946,780 to 2,947,250
_12625
CA264_12630: CA264_12630 - RDD family protein, at 2,947,420 to 2,947,851
_12630
Position (kb)
2945
2946
2947 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2944.753 kb on + strand, within CA264_12615 at 2944.814 kb on - strand, within CA264_12615 at 2944.826 kb on - strand, within CA264_12615 at 2945.134 kb on + strand, within CA264_12615 at 2945.219 kb on - strand, within CA264_12615 at 2945.237 kb on + strand, within CA264_12615 at 2945.242 kb on - strand, within CA264_12615 at 2945.415 kb on - strand at 2945.483 kb on + strand at 2945.627 kb on + strand at 2945.658 kb on + strand at 2945.659 kb on - strand at 2945.693 kb on - strand at 2945.693 kb on - strand at 2945.693 kb on - strand at 2945.693 kb on - strand at 2945.696 kb on + strand at 2945.697 kb on - strand at 2945.697 kb on - strand at 2945.737 kb on + strand at 2945.742 kb on - strand at 2945.742 kb on - strand at 2945.747 kb on - strand at 2945.758 kb on - strand at 2946.025 kb on + strand, within CA264_12620 at 2946.037 kb on - strand, within CA264_12620 at 2946.122 kb on - strand, within CA264_12620 at 2946.136 kb on + strand, within CA264_12620 at 2946.165 kb on + strand, within CA264_12620 at 2946.286 kb on + strand, within CA264_12620 at 2946.354 kb on + strand, within CA264_12620 at 2946.355 kb on - strand, within CA264_12620 at 2946.381 kb on + strand, within CA264_12620 at 2946.401 kb on + strand, within CA264_12620 at 2946.487 kb on + strand, within CA264_12620 at 2946.487 kb on + strand, within CA264_12620 at 2946.595 kb on + strand at 2946.602 kb on - strand at 2946.602 kb on - strand at 2946.622 kb on - strand at 2946.645 kb on + strand at 2946.689 kb on + strand at 2946.690 kb on - strand at 2946.690 kb on - strand at 2946.751 kb on + strand at 2946.751 kb on + strand at 2946.774 kb on - strand at 2946.774 kb on - strand at 2946.774 kb on - strand at 2946.776 kb on + strand at 2946.776 kb on + strand at 2946.776 kb on + strand at 2946.829 kb on - strand, within CA264_12625 at 2946.996 kb on + strand, within CA264_12625 at 2947.139 kb on + strand, within CA264_12625 at 2947.139 kb on + strand, within CA264_12625 at 2947.212 kb on - strand at 2947.248 kb on + strand at 2947.249 kb on - strand at 2947.275 kb on - strand at 2947.313 kb on + strand at 2947.330 kb on + strand at 2947.336 kb on - strand at 2947.339 kb on + strand at 2947.339 kb on + strand at 2947.339 kb on + strand at 2947.339 kb on + strand at 2947.339 kb on + strand at 2947.340 kb on - strand at 2947.372 kb on - strand at 2947.383 kb on + strand at 2947.389 kb on + strand at 2947.419 kb on + strand at 2947.433 kb on - strand at 2947.433 kb on - strand at 2947.469 kb on + strand, within CA264_12630 at 2947.524 kb on - strand, within CA264_12630 at 2947.540 kb on + strand, within CA264_12630 at 2947.541 kb on - strand, within CA264_12630 at 2947.614 kb on - strand, within CA264_12630 at 2947.615 kb on + strand, within CA264_12630
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.58 mg/ml remove 2,944,753 + CA264_12615 0.58 +0.0 2,944,814 - CA264_12615 0.62 -0.2 2,944,826 - CA264_12615 0.62 -0.3 2,945,134 + CA264_12615 0.81 +1.2 2,945,219 - CA264_12615 0.86 +1.5 2,945,237 + CA264_12615 0.87 -0.6 2,945,242 - CA264_12615 0.88 +0.7 2,945,415 - -0.0 2,945,483 + -0.9 2,945,627 + -0.2 2,945,658 + +0.2 2,945,659 - -0.4 2,945,693 - -0.8 2,945,693 - +0.6 2,945,693 - -0.2 2,945,693 - -0.5 2,945,696 + -0.1 2,945,697 - +1.6 2,945,697 - -0.2 2,945,737 + +0.4 2,945,742 - -0.7 2,945,742 - -0.1 2,945,747 - -0.1 2,945,758 - +0.2 2,946,025 + CA264_12620 0.36 +0.2 2,946,037 - CA264_12620 0.37 -0.0 2,946,122 - CA264_12620 0.46 +0.1 2,946,136 + CA264_12620 0.47 -0.5 2,946,165 + CA264_12620 0.50 -0.4 2,946,286 + CA264_12620 0.62 -0.4 2,946,354 + CA264_12620 0.69 -0.7 2,946,355 - CA264_12620 0.69 -0.6 2,946,381 + CA264_12620 0.72 -3.0 2,946,401 + CA264_12620 0.74 -1.1 2,946,487 + CA264_12620 0.82 +0.1 2,946,487 + CA264_12620 0.82 -0.8 2,946,595 + +0.2 2,946,602 - +0.3 2,946,602 - +0.9 2,946,622 - -1.5 2,946,645 + -0.0 2,946,689 + -0.5 2,946,690 - -0.3 2,946,690 - +0.3 2,946,751 + -0.7 2,946,751 + +0.4 2,946,774 - -0.2 2,946,774 - +0.3 2,946,774 - +0.2 2,946,776 + +0.5 2,946,776 + -0.4 2,946,776 + +0.1 2,946,829 - CA264_12625 0.10 -0.8 2,946,996 + CA264_12625 0.46 -0.3 2,947,139 + CA264_12625 0.76 -0.5 2,947,139 + CA264_12625 0.76 -0.6 2,947,212 - +0.8 2,947,248 + -0.2 2,947,249 - +1.6 2,947,275 - +0.2 2,947,313 + +0.8 2,947,330 + +0.7 2,947,336 - +0.1 2,947,339 + +0.5 2,947,339 + -0.3 2,947,339 + -0.3 2,947,339 + +1.4 2,947,339 + +0.4 2,947,340 - -0.0 2,947,372 - +0.0 2,947,383 + -0.4 2,947,389 + +0.4 2,947,419 + +0.7 2,947,433 - -0.2 2,947,433 - -1.2 2,947,469 + CA264_12630 0.11 +0.0 2,947,524 - CA264_12630 0.24 -0.0 2,947,540 + CA264_12630 0.28 -0.3 2,947,541 - CA264_12630 0.28 -0.3 2,947,614 - CA264_12630 0.45 -0.5 2,947,615 + CA264_12630 0.45 +0.2
Or see this region's nucleotide sequence