Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_12190

Experiment: m.b. benzoic 0.58 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_12180 and CA264_12185 are separated by 78 nucleotidesCA264_12185 and CA264_12190 are separated by 121 nucleotidesCA264_12190 and CA264_12195 are separated by 40 nucleotidesCA264_12195 and CA264_12200 are separated by 467 nucleotides CA264_12180: CA264_12180 - hypothetical protein, at 2,839,231 to 2,839,929 _12180 CA264_12185: CA264_12185 - 5'/3'-nucleotidase SurE, at 2,840,008 to 2,840,784 _12185 CA264_12190: CA264_12190 - hypothetical protein, at 2,840,906 to 2,841,511 _12190 CA264_12195: CA264_12195 - DoxX family protein, at 2,841,552 to 2,842,004 _12195 CA264_12200: CA264_12200 - hypothetical protein, at 2,842,472 to 2,844,229 _12200 Position (kb) 2840 2841 2842Strain fitness (log2 ratio) -2 -1 0 1 2at 2839.933 kb on + strandat 2839.933 kb on + strandat 2839.934 kb on - strandat 2839.934 kb on - strandat 2839.935 kb on + strandat 2839.936 kb on - strandat 2840.010 kb on - strandat 2840.085 kb on + strandat 2840.085 kb on + strandat 2840.085 kb on + strandat 2840.088 kb on - strand, within CA264_12185at 2840.162 kb on + strand, within CA264_12185at 2840.244 kb on + strand, within CA264_12185at 2840.376 kb on - strand, within CA264_12185at 2840.576 kb on + strand, within CA264_12185at 2840.640 kb on + strand, within CA264_12185at 2840.681 kb on - strand, within CA264_12185at 2840.684 kb on - strand, within CA264_12185at 2840.684 kb on - strand, within CA264_12185at 2840.686 kb on + strand, within CA264_12185at 2840.686 kb on + strand, within CA264_12185at 2840.686 kb on + strand, within CA264_12185at 2840.687 kb on - strand, within CA264_12185at 2840.687 kb on - strand, within CA264_12185at 2840.687 kb on - strand, within CA264_12185at 2840.771 kb on - strandat 2840.778 kb on + strandat 2840.838 kb on - strandat 2840.840 kb on + strandat 2840.840 kb on + strandat 2840.840 kb on + strandat 2840.841 kb on - strandat 2840.841 kb on - strandat 2840.843 kb on - strandat 2840.845 kb on + strandat 2840.845 kb on + strandat 2840.872 kb on + strandat 2840.917 kb on + strandat 2840.918 kb on - strandat 2840.920 kb on + strandat 2840.920 kb on + strandat 2840.920 kb on + strandat 2840.925 kb on - strandat 2841.061 kb on - strand, within CA264_12190at 2841.185 kb on + strand, within CA264_12190at 2841.185 kb on + strand, within CA264_12190at 2841.186 kb on - strand, within CA264_12190at 2841.186 kb on - strand, within CA264_12190at 2841.186 kb on - strand, within CA264_12190at 2841.226 kb on - strand, within CA264_12190at 2841.256 kb on - strand, within CA264_12190at 2841.265 kb on + strand, within CA264_12190at 2841.309 kb on + strand, within CA264_12190at 2841.310 kb on - strand, within CA264_12190at 2841.310 kb on - strand, within CA264_12190at 2841.341 kb on + strand, within CA264_12190at 2841.341 kb on + strand, within CA264_12190at 2841.341 kb on + strand, within CA264_12190at 2841.342 kb on - strand, within CA264_12190at 2841.343 kb on + strand, within CA264_12190at 2841.344 kb on - strand, within CA264_12190at 2841.471 kb on + strandat 2841.505 kb on - strandat 2841.506 kb on + strandat 2841.506 kb on + strandat 2841.507 kb on - strandat 2841.514 kb on + strandat 2841.515 kb on - strandat 2841.515 kb on - strandat 2841.520 kb on + strandat 2841.521 kb on - strandat 2841.521 kb on - strandat 2841.521 kb on - strandat 2841.523 kb on - strandat 2841.525 kb on + strandat 2841.539 kb on + strandat 2841.542 kb on - strandat 2841.542 kb on - strandat 2841.542 kb on - strandat 2841.551 kb on + strandat 2841.552 kb on - strandat 2841.559 kb on + strandat 2841.560 kb on - strandat 2841.629 kb on + strand, within CA264_12195at 2841.630 kb on - strand, within CA264_12195at 2841.631 kb on + strand, within CA264_12195at 2841.682 kb on + strand, within CA264_12195at 2841.832 kb on + strand, within CA264_12195at 2841.832 kb on + strand, within CA264_12195at 2841.990 kb on - strandat 2842.026 kb on - strandat 2842.026 kb on - strandat 2842.051 kb on - strandat 2842.056 kb on + strandat 2842.056 kb on + strandat 2842.056 kb on + strandat 2842.057 kb on - strandat 2842.057 kb on - strandat 2842.057 kb on - strandat 2842.138 kb on + strandat 2842.139 kb on - strandat 2842.162 kb on + strandat 2842.163 kb on - strandat 2842.163 kb on - strandat 2842.188 kb on + strandat 2842.189 kb on - strandat 2842.224 kb on - strandat 2842.317 kb on - strandat 2842.343 kb on + strandat 2842.391 kb on - strandat 2842.417 kb on + strandat 2842.454 kb on - strandat 2842.476 kb on + strandat 2842.476 kb on + strandat 2842.477 kb on - strandat 2842.488 kb on + strandat 2842.489 kb on - strandat 2842.489 kb on - strandat 2842.503 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.58 mg/ml
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2,839,933 + -1.2
2,839,933 + +0.2
2,839,934 - -0.3
2,839,934 - +0.1
2,839,935 + -0.3
2,839,936 - +0.7
2,840,010 - +1.3
2,840,085 + -0.4
2,840,085 + +0.6
2,840,085 + -0.7
2,840,088 - CA264_12185 0.10 -0.2
2,840,162 + CA264_12185 0.20 -0.2
2,840,244 + CA264_12185 0.30 +0.1
2,840,376 - CA264_12185 0.47 -0.3
2,840,576 + CA264_12185 0.73 -0.6
2,840,640 + CA264_12185 0.81 +0.4
2,840,681 - CA264_12185 0.87 +0.7
2,840,684 - CA264_12185 0.87 -0.3
2,840,684 - CA264_12185 0.87 -0.2
2,840,686 + CA264_12185 0.87 -0.5
2,840,686 + CA264_12185 0.87 -1.1
2,840,686 + CA264_12185 0.87 -0.1
2,840,687 - CA264_12185 0.87 -0.0
2,840,687 - CA264_12185 0.87 +0.3
2,840,687 - CA264_12185 0.87 -0.6
2,840,771 - -1.3
2,840,778 + +0.2
2,840,838 - +0.4
2,840,840 + -1.2
2,840,840 + +0.2
2,840,840 + -0.2
2,840,841 - +0.2
2,840,841 - +0.2
2,840,843 - +0.3
2,840,845 + -0.7
2,840,845 + -0.1
2,840,872 + +0.4
2,840,917 + +0.1
2,840,918 - -0.8
2,840,920 + +0.6
2,840,920 + -0.5
2,840,920 + -0.3
2,840,925 - +0.4
2,841,061 - CA264_12190 0.26 +1.6
2,841,185 + CA264_12190 0.46 +0.4
2,841,185 + CA264_12190 0.46 -0.3
2,841,186 - CA264_12190 0.46 -2.0
2,841,186 - CA264_12190 0.46 +0.5
2,841,186 - CA264_12190 0.46 +0.5
2,841,226 - CA264_12190 0.53 +0.6
2,841,256 - CA264_12190 0.58 +0.5
2,841,265 + CA264_12190 0.59 +0.1
2,841,309 + CA264_12190 0.67 +0.1
2,841,310 - CA264_12190 0.67 +0.9
2,841,310 - CA264_12190 0.67 -0.6
2,841,341 + CA264_12190 0.72 -0.1
2,841,341 + CA264_12190 0.72 +1.0
2,841,341 + CA264_12190 0.72 +0.8
2,841,342 - CA264_12190 0.72 +0.1
2,841,343 + CA264_12190 0.72 +1.1
2,841,344 - CA264_12190 0.72 +1.0
2,841,471 + -0.4
2,841,505 - -0.3
2,841,506 + -0.1
2,841,506 + +1.7
2,841,507 - -1.9
2,841,514 + -0.3
2,841,515 - -0.1
2,841,515 - +0.5
2,841,520 + -0.3
2,841,521 - +0.8
2,841,521 - -0.6
2,841,521 - -0.3
2,841,523 - +0.3
2,841,525 + +0.2
2,841,539 + +1.5
2,841,542 - +0.0
2,841,542 - -0.3
2,841,542 - -0.4
2,841,551 + -1.0
2,841,552 - -0.6
2,841,559 + +0.4
2,841,560 - -1.3
2,841,629 + CA264_12195 0.17 +0.0
2,841,630 - CA264_12195 0.17 +2.1
2,841,631 + CA264_12195 0.17 +0.3
2,841,682 + CA264_12195 0.29 -0.6
2,841,832 + CA264_12195 0.62 -0.7
2,841,832 + CA264_12195 0.62 -0.0
2,841,990 - -0.7
2,842,026 - -0.3
2,842,026 - -1.0
2,842,051 - -0.6
2,842,056 + -0.7
2,842,056 + -0.1
2,842,056 + -0.9
2,842,057 - -0.3
2,842,057 - +0.7
2,842,057 - -0.3
2,842,138 + -0.8
2,842,139 - -0.1
2,842,162 + -0.4
2,842,163 - +0.1
2,842,163 - +0.7
2,842,188 + -0.0
2,842,189 - +0.3
2,842,224 - -2.5
2,842,317 - +0.2
2,842,343 + -0.7
2,842,391 - -0.1
2,842,417 + -0.2
2,842,454 - +1.9
2,842,476 + -1.0
2,842,476 + -0.0
2,842,477 - -0.3
2,842,488 + +0.9
2,842,489 - -0.2
2,842,489 - +0.1
2,842,503 + +0.2

Or see this region's nucleotide sequence