Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_11815

Experiment: m.b. benzoic 0.58 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_11805 and CA264_11810 are separated by 204 nucleotidesCA264_11810 and CA264_11815 are separated by 103 nucleotidesCA264_11815 and CA264_11820 are separated by 126 nucleotidesCA264_11820 and CA264_11825 are separated by 49 nucleotides CA264_11805: CA264_11805 - thioesterase, at 2,748,371 to 2,748,886 _11805 CA264_11810: CA264_11810 - HAD family hydrolase, at 2,749,091 to 2,749,729 _11810 CA264_11815: CA264_11815 - hypothetical protein, at 2,749,833 to 2,750,219 _11815 CA264_11820: CA264_11820 - thioesterase, at 2,750,346 to 2,750,792 _11820 CA264_11825: CA264_11825 - hypothetical protein, at 2,750,842 to 2,751,939 _11825 Position (kb) 2749 2750 2751Strain fitness (log2 ratio) -1 0 1 2at 2748.835 kb on - strandat 2748.835 kb on - strandat 2748.885 kb on - strandat 2748.919 kb on + strandat 2748.920 kb on - strandat 2749.036 kb on - strandat 2749.056 kb on + strandat 2749.056 kb on + strandat 2749.057 kb on - strandat 2749.057 kb on - strandat 2749.059 kb on - strandat 2749.090 kb on + strandat 2749.149 kb on - strandat 2749.149 kb on - strandat 2749.195 kb on - strand, within CA264_11810at 2749.439 kb on + strand, within CA264_11810at 2749.465 kb on + strand, within CA264_11810at 2749.470 kb on + strand, within CA264_11810at 2749.471 kb on - strand, within CA264_11810at 2749.515 kb on + strand, within CA264_11810at 2749.624 kb on + strand, within CA264_11810at 2749.745 kb on + strandat 2749.745 kb on + strandat 2749.746 kb on - strandat 2749.794 kb on + strandat 2749.795 kb on - strandat 2749.838 kb on - strandat 2749.858 kb on - strandat 2749.872 kb on + strand, within CA264_11815at 2749.872 kb on + strand, within CA264_11815at 2749.872 kb on + strand, within CA264_11815at 2749.875 kb on - strand, within CA264_11815at 2749.911 kb on + strand, within CA264_11815at 2749.912 kb on - strand, within CA264_11815at 2749.926 kb on + strand, within CA264_11815at 2749.927 kb on - strand, within CA264_11815at 2749.977 kb on + strand, within CA264_11815at 2750.013 kb on + strand, within CA264_11815at 2750.014 kb on - strand, within CA264_11815at 2750.023 kb on - strand, within CA264_11815at 2750.086 kb on + strand, within CA264_11815at 2750.129 kb on - strand, within CA264_11815at 2750.129 kb on - strand, within CA264_11815at 2750.145 kb on - strand, within CA264_11815at 2750.297 kb on + strandat 2750.297 kb on + strandat 2750.298 kb on - strandat 2750.329 kb on + strandat 2750.330 kb on - strandat 2750.331 kb on + strandat 2750.331 kb on + strandat 2750.335 kb on + strandat 2750.335 kb on + strandat 2750.335 kb on + strandat 2750.336 kb on - strandat 2750.337 kb on + strandat 2750.338 kb on - strandat 2750.479 kb on - strand, within CA264_11820at 2750.500 kb on + strand, within CA264_11820at 2750.501 kb on - strand, within CA264_11820at 2750.542 kb on - strand, within CA264_11820at 2750.577 kb on - strand, within CA264_11820at 2750.582 kb on + strand, within CA264_11820at 2750.618 kb on - strand, within CA264_11820at 2750.776 kb on - strandat 2750.868 kb on + strandat 2750.889 kb on + strandat 2750.889 kb on + strandat 2750.927 kb on + strandat 2751.020 kb on + strand, within CA264_11825at 2751.053 kb on + strand, within CA264_11825at 2751.054 kb on - strand, within CA264_11825at 2751.121 kb on - strand, within CA264_11825at 2751.206 kb on + strand, within CA264_11825at 2751.206 kb on + strand, within CA264_11825at 2751.207 kb on - strand, within CA264_11825at 2751.210 kb on - strand, within CA264_11825at 2751.212 kb on - strand, within CA264_11825at 2751.212 kb on - strand, within CA264_11825at 2751.212 kb on - strand, within CA264_11825

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.58 mg/ml
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2,748,835 - +0.0
2,748,835 - -0.5
2,748,885 - -0.2
2,748,919 + -0.0
2,748,920 - +0.2
2,749,036 - +1.1
2,749,056 + +0.0
2,749,056 + +1.4
2,749,057 - +0.7
2,749,057 - +0.8
2,749,059 - -1.0
2,749,090 + +1.2
2,749,149 - +0.3
2,749,149 - +0.2
2,749,195 - CA264_11810 0.16 +0.7
2,749,439 + CA264_11810 0.54 +0.1
2,749,465 + CA264_11810 0.59 +0.6
2,749,470 + CA264_11810 0.59 +0.2
2,749,471 - CA264_11810 0.59 +1.2
2,749,515 + CA264_11810 0.66 -0.1
2,749,624 + CA264_11810 0.83 +0.5
2,749,745 + +0.2
2,749,745 + +0.2
2,749,746 - +0.6
2,749,794 + +0.8
2,749,795 - +0.6
2,749,838 - +2.1
2,749,858 - +0.5
2,749,872 + CA264_11815 0.10 +0.6
2,749,872 + CA264_11815 0.10 +0.8
2,749,872 + CA264_11815 0.10 -0.3
2,749,875 - CA264_11815 0.11 +0.5
2,749,911 + CA264_11815 0.20 -0.1
2,749,912 - CA264_11815 0.20 +0.4
2,749,926 + CA264_11815 0.24 +0.4
2,749,927 - CA264_11815 0.24 -0.2
2,749,977 + CA264_11815 0.37 -1.2
2,750,013 + CA264_11815 0.47 +0.1
2,750,014 - CA264_11815 0.47 +2.1
2,750,023 - CA264_11815 0.49 +0.5
2,750,086 + CA264_11815 0.65 +1.9
2,750,129 - CA264_11815 0.76 +0.1
2,750,129 - CA264_11815 0.76 -0.1
2,750,145 - CA264_11815 0.81 +0.1
2,750,297 + +0.2
2,750,297 + -0.0
2,750,298 - +0.1
2,750,329 + +1.1
2,750,330 - -1.5
2,750,331 + -0.4
2,750,331 + -0.1
2,750,335 + -0.2
2,750,335 + -0.8
2,750,335 + -0.6
2,750,336 - +0.3
2,750,337 + -0.1
2,750,338 - +0.6
2,750,479 - CA264_11820 0.30 +0.2
2,750,500 + CA264_11820 0.34 -0.6
2,750,501 - CA264_11820 0.35 +0.4
2,750,542 - CA264_11820 0.44 +0.3
2,750,577 - CA264_11820 0.52 -0.2
2,750,582 + CA264_11820 0.53 -1.2
2,750,618 - CA264_11820 0.61 -0.3
2,750,776 - +0.0
2,750,868 + +0.1
2,750,889 + -0.5
2,750,889 + +0.7
2,750,927 + -0.1
2,751,020 + CA264_11825 0.16 +0.1
2,751,053 + CA264_11825 0.19 +2.0
2,751,054 - CA264_11825 0.19 -0.3
2,751,121 - CA264_11825 0.25 +0.5
2,751,206 + CA264_11825 0.33 +0.3
2,751,206 + CA264_11825 0.33 -0.1
2,751,207 - CA264_11825 0.33 +0.2
2,751,210 - CA264_11825 0.34 +0.2
2,751,212 - CA264_11825 0.34 -0.7
2,751,212 - CA264_11825 0.34 -0.2
2,751,212 - CA264_11825 0.34 +0.3

Or see this region's nucleotide sequence