Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03130

Experiment: m.b. benzoic 0.58 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03125 and CA264_03130 are separated by 160 nucleotidesCA264_03130 and CA264_03135 are separated by 54 nucleotides CA264_03125: CA264_03125 - oxygen-independent coproporphyrinogen III oxidase, at 729,000 to 730,376 _03125 CA264_03130: CA264_03130 - alanine racemase, at 730,537 to 731,655 _03130 CA264_03135: CA264_03135 - hydrolase, at 731,710 to 732,537 _03135 Position (kb) 730 731 732Strain fitness (log2 ratio) -2 -1 0 1at 729.547 kb on + strand, within CA264_03125at 729.632 kb on - strand, within CA264_03125at 729.632 kb on - strand, within CA264_03125at 729.632 kb on - strand, within CA264_03125at 729.638 kb on - strand, within CA264_03125at 729.638 kb on - strand, within CA264_03125at 729.721 kb on + strand, within CA264_03125at 729.725 kb on + strand, within CA264_03125at 729.726 kb on - strand, within CA264_03125at 729.747 kb on - strand, within CA264_03125at 729.747 kb on - strand, within CA264_03125at 729.749 kb on - strand, within CA264_03125at 730.106 kb on - strand, within CA264_03125at 730.157 kb on - strand, within CA264_03125at 730.264 kb on - strandat 730.330 kb on + strandat 730.458 kb on - strandat 730.458 kb on - strandat 730.532 kb on - strandat 730.545 kb on + strandat 730.545 kb on + strandat 730.545 kb on + strandat 730.546 kb on - strandat 730.555 kb on - strandat 730.560 kb on - strandat 730.628 kb on + strandat 730.647 kb on + strandat 730.762 kb on - strand, within CA264_03130at 730.954 kb on + strand, within CA264_03130at 730.985 kb on + strand, within CA264_03130at 731.037 kb on + strand, within CA264_03130at 731.038 kb on - strand, within CA264_03130at 731.041 kb on + strand, within CA264_03130at 731.041 kb on + strand, within CA264_03130at 731.041 kb on + strand, within CA264_03130at 731.042 kb on - strand, within CA264_03130at 731.042 kb on - strand, within CA264_03130at 731.042 kb on - strand, within CA264_03130at 731.059 kb on + strand, within CA264_03130at 731.060 kb on - strand, within CA264_03130at 731.121 kb on + strand, within CA264_03130at 731.121 kb on + strand, within CA264_03130at 731.121 kb on + strand, within CA264_03130at 731.275 kb on - strand, within CA264_03130at 731.286 kb on + strand, within CA264_03130at 731.287 kb on - strand, within CA264_03130at 731.287 kb on - strand, within CA264_03130at 731.287 kb on - strand, within CA264_03130at 731.338 kb on + strand, within CA264_03130at 731.371 kb on - strand, within CA264_03130at 731.395 kb on - strand, within CA264_03130at 731.687 kb on - strandat 731.687 kb on - strandat 731.689 kb on - strandat 731.764 kb on - strandat 731.885 kb on - strand, within CA264_03135at 731.885 kb on - strand, within CA264_03135at 732.058 kb on + strand, within CA264_03135at 732.128 kb on - strand, within CA264_03135at 732.293 kb on + strand, within CA264_03135at 732.294 kb on - strand, within CA264_03135at 732.294 kb on - strand, within CA264_03135at 732.308 kb on - strand, within CA264_03135at 732.308 kb on - strand, within CA264_03135at 732.334 kb on + strand, within CA264_03135at 732.401 kb on + strand, within CA264_03135at 732.530 kb on + strandat 732.536 kb on - strandat 732.566 kb on + strandat 732.589 kb on - strandat 732.594 kb on - strandat 732.594 kb on - strandat 732.594 kb on - strandat 732.594 kb on - strandat 732.595 kb on + strandat 732.596 kb on - strandat 732.596 kb on - strandat 732.614 kb on + strandat 732.615 kb on - strandat 732.617 kb on - strandat 732.617 kb on - strandat 732.617 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.58 mg/ml
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729,547 + CA264_03125 0.40 +0.2
729,632 - CA264_03125 0.46 +1.2
729,632 - CA264_03125 0.46 +0.7
729,632 - CA264_03125 0.46 -0.7
729,638 - CA264_03125 0.46 +0.7
729,638 - CA264_03125 0.46 +0.2
729,721 + CA264_03125 0.52 +0.1
729,725 + CA264_03125 0.53 +0.0
729,726 - CA264_03125 0.53 -0.4
729,747 - CA264_03125 0.54 +0.3
729,747 - CA264_03125 0.54 +0.4
729,749 - CA264_03125 0.54 -0.5
730,106 - CA264_03125 0.80 +0.1
730,157 - CA264_03125 0.84 +0.0
730,264 - -0.0
730,330 + -0.0
730,458 - +0.1
730,458 - +0.1
730,532 - +0.1
730,545 + -0.1
730,545 + +0.4
730,545 + -0.0
730,546 - +0.1
730,555 - +0.6
730,560 - -0.2
730,628 + +0.1
730,647 + -0.9
730,762 - CA264_03130 0.20 +0.2
730,954 + CA264_03130 0.37 +0.2
730,985 + CA264_03130 0.40 -1.2
731,037 + CA264_03130 0.45 -0.4
731,038 - CA264_03130 0.45 -0.5
731,041 + CA264_03130 0.45 -0.3
731,041 + CA264_03130 0.45 -0.2
731,041 + CA264_03130 0.45 -0.7
731,042 - CA264_03130 0.45 -1.1
731,042 - CA264_03130 0.45 +0.3
731,042 - CA264_03130 0.45 -0.0
731,059 + CA264_03130 0.47 -0.4
731,060 - CA264_03130 0.47 +0.1
731,121 + CA264_03130 0.52 -0.8
731,121 + CA264_03130 0.52 -0.3
731,121 + CA264_03130 0.52 -2.6
731,275 - CA264_03130 0.66 -0.3
731,286 + CA264_03130 0.67 -0.3
731,287 - CA264_03130 0.67 -0.1
731,287 - CA264_03130 0.67 -0.3
731,287 - CA264_03130 0.67 -0.7
731,338 + CA264_03130 0.72 -0.6
731,371 - CA264_03130 0.75 -0.7
731,395 - CA264_03130 0.77 -0.6
731,687 - -0.1
731,687 - +0.4
731,689 - -1.5
731,764 - +0.2
731,885 - CA264_03135 0.21 +0.4
731,885 - CA264_03135 0.21 -0.3
732,058 + CA264_03135 0.42 -0.6
732,128 - CA264_03135 0.50 -0.3
732,293 + CA264_03135 0.70 -0.6
732,294 - CA264_03135 0.71 -1.2
732,294 - CA264_03135 0.71 +0.1
732,308 - CA264_03135 0.72 -0.0
732,308 - CA264_03135 0.72 -0.2
732,334 + CA264_03135 0.75 +0.2
732,401 + CA264_03135 0.83 +0.2
732,530 + -1.4
732,536 - +0.7
732,566 + -1.2
732,589 - +0.3
732,594 - -1.3
732,594 - -0.7
732,594 - -1.0
732,594 - -0.3
732,595 + -0.9
732,596 - +0.6
732,596 - +0.5
732,614 + +0.2
732,615 - -0.3
732,617 - -0.0
732,617 - -0.0
732,617 - +0.9

Or see this region's nucleotide sequence