Experiment: m.b. benzoic 0.58 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_01775 and CA264_01780 are separated by 72 nucleotides CA264_01780 and CA264_01785 are separated by 45 nucleotides CA264_01785 and CA264_01790 are separated by 33 nucleotides CA264_01790 and CA264_01795 are separated by 154 nucleotides
CA264_01775: CA264_01775 - hypothetical protein, at 420,928 to 421,665
_01775
CA264_01780: CA264_01780 - hypothetical protein, at 421,738 to 422,310
_01780
CA264_01785: CA264_01785 - hypothetical protein, at 422,356 to 422,796
_01785
CA264_01790: CA264_01790 - hypothetical protein, at 422,830 to 423,120
_01790
CA264_01795: CA264_01795 - hypothetical protein, at 423,275 to 423,592
_01795
Position (kb) 421
422
423 Strain fitness (log2 ratio) -2
-1
0
1
2 at 420.746 kb on + strand at 420.757 kb on - strand at 420.757 kb on - strand at 420.757 kb on - strand at 420.758 kb on + strand at 420.836 kb on - strand at 420.838 kb on + strand at 420.838 kb on + strand at 420.839 kb on - strand at 420.839 kb on - strand at 420.839 kb on - strand at 420.839 kb on - strand at 420.841 kb on - strand at 420.886 kb on + strand at 420.923 kb on - strand at 421.054 kb on + strand, within CA264_01775 at 421.055 kb on - strand, within CA264_01775 at 421.146 kb on + strand, within CA264_01775 at 421.150 kb on + strand, within CA264_01775 at 421.213 kb on + strand, within CA264_01775 at 421.241 kb on - strand, within CA264_01775 at 421.241 kb on - strand, within CA264_01775 at 421.262 kb on - strand, within CA264_01775 at 421.262 kb on - strand, within CA264_01775 at 421.298 kb on - strand, within CA264_01775 at 421.335 kb on + strand, within CA264_01775 at 421.345 kb on + strand, within CA264_01775 at 421.348 kb on + strand, within CA264_01775 at 421.349 kb on - strand, within CA264_01775 at 421.349 kb on - strand, within CA264_01775 at 421.444 kb on + strand, within CA264_01775 at 421.445 kb on - strand, within CA264_01775 at 421.519 kb on + strand, within CA264_01775 at 421.537 kb on + strand, within CA264_01775 at 421.538 kb on - strand, within CA264_01775 at 421.542 kb on - strand, within CA264_01775 at 421.558 kb on + strand, within CA264_01775 at 421.558 kb on + strand, within CA264_01775 at 421.632 kb on + strand at 421.791 kb on + strand at 421.801 kb on - strand, within CA264_01780 at 421.810 kb on - strand, within CA264_01780 at 421.904 kb on + strand, within CA264_01780 at 421.905 kb on - strand, within CA264_01780 at 421.907 kb on - strand, within CA264_01780 at 421.938 kb on - strand, within CA264_01780 at 421.938 kb on - strand, within CA264_01780 at 421.938 kb on - strand, within CA264_01780 at 422.056 kb on + strand, within CA264_01780 at 422.056 kb on + strand, within CA264_01780 at 422.189 kb on + strand, within CA264_01780 at 422.189 kb on + strand, within CA264_01780 at 422.189 kb on + strand, within CA264_01780 at 422.189 kb on + strand, within CA264_01780 at 422.190 kb on - strand, within CA264_01780 at 422.193 kb on + strand, within CA264_01780 at 422.194 kb on - strand, within CA264_01780 at 422.306 kb on - strand at 422.357 kb on + strand at 422.409 kb on - strand, within CA264_01785 at 422.409 kb on - strand, within CA264_01785 at 422.425 kb on + strand, within CA264_01785 at 422.466 kb on - strand, within CA264_01785 at 422.640 kb on + strand, within CA264_01785 at 422.652 kb on - strand, within CA264_01785 at 422.690 kb on - strand, within CA264_01785 at 422.690 kb on - strand, within CA264_01785 at 422.695 kb on + strand, within CA264_01785 at 422.695 kb on + strand, within CA264_01785 at 422.696 kb on - strand, within CA264_01785 at 422.696 kb on - strand, within CA264_01785 at 422.732 kb on - strand, within CA264_01785 at 422.790 kb on + strand at 422.829 kb on + strand at 422.918 kb on + strand, within CA264_01790 at 422.978 kb on + strand, within CA264_01790 at 423.136 kb on + strand at 423.137 kb on - strand at 423.142 kb on + strand at 423.142 kb on + strand at 423.143 kb on - strand at 423.143 kb on - strand at 423.161 kb on + strand at 423.177 kb on + strand at 423.178 kb on - strand at 423.254 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.58 mg/ml remove 420,746 + +0.9 420,757 - -0.7 420,757 - +0.5 420,757 - -0.3 420,758 + -0.5 420,836 - -0.1 420,838 + +1.0 420,838 + +0.2 420,839 - -0.3 420,839 - -0.3 420,839 - -0.4 420,839 - +0.2 420,841 - -0.2 420,886 + +0.5 420,923 - +0.5 421,054 + CA264_01775 0.17 +0.9 421,055 - CA264_01775 0.17 +0.9 421,146 + CA264_01775 0.30 +0.2 421,150 + CA264_01775 0.30 +1.9 421,213 + CA264_01775 0.39 -0.2 421,241 - CA264_01775 0.42 -0.1 421,241 - CA264_01775 0.42 +0.1 421,262 - CA264_01775 0.45 +0.6 421,262 - CA264_01775 0.45 +0.6 421,298 - CA264_01775 0.50 -1.7 421,335 + CA264_01775 0.55 +0.1 421,345 + CA264_01775 0.57 -0.3 421,348 + CA264_01775 0.57 -1.3 421,349 - CA264_01775 0.57 -0.4 421,349 - CA264_01775 0.57 -0.1 421,444 + CA264_01775 0.70 +0.2 421,445 - CA264_01775 0.70 -0.1 421,519 + CA264_01775 0.80 +0.0 421,537 + CA264_01775 0.83 -0.4 421,538 - CA264_01775 0.83 -0.2 421,542 - CA264_01775 0.83 -0.2 421,558 + CA264_01775 0.85 -0.3 421,558 + CA264_01775 0.85 +0.5 421,632 + +0.2 421,791 + -0.0 421,801 - CA264_01780 0.11 +0.5 421,810 - CA264_01780 0.13 -1.0 421,904 + CA264_01780 0.29 +0.7 421,905 - CA264_01780 0.29 +0.1 421,907 - CA264_01780 0.29 +0.5 421,938 - CA264_01780 0.35 +0.3 421,938 - CA264_01780 0.35 +0.6 421,938 - CA264_01780 0.35 +0.0 422,056 + CA264_01780 0.55 -0.3 422,056 + CA264_01780 0.55 -0.1 422,189 + CA264_01780 0.79 -0.1 422,189 + CA264_01780 0.79 +0.2 422,189 + CA264_01780 0.79 +0.8 422,189 + CA264_01780 0.79 -0.0 422,190 - CA264_01780 0.79 -0.1 422,193 + CA264_01780 0.79 +0.1 422,194 - CA264_01780 0.80 -0.0 422,306 - +0.4 422,357 + -0.3 422,409 - CA264_01785 0.12 +2.5 422,409 - CA264_01785 0.12 -0.5 422,425 + CA264_01785 0.16 +0.5 422,466 - CA264_01785 0.25 +1.2 422,640 + CA264_01785 0.64 -0.2 422,652 - CA264_01785 0.67 -1.4 422,690 - CA264_01785 0.76 -2.1 422,690 - CA264_01785 0.76 +0.5 422,695 + CA264_01785 0.77 +1.6 422,695 + CA264_01785 0.77 +1.0 422,696 - CA264_01785 0.77 -2.2 422,696 - CA264_01785 0.77 +1.4 422,732 - CA264_01785 0.85 -0.3 422,790 + -0.1 422,829 + +0.3 422,918 + CA264_01790 0.30 -0.2 422,978 + CA264_01790 0.51 +0.3 423,136 + -0.3 423,137 - +1.0 423,142 + +0.0 423,142 + +1.5 423,143 - +0.3 423,143 - +0.0 423,161 + +1.8 423,177 + -0.1 423,178 - -0.1 423,254 - +0.2
Or see this region's nucleotide sequence