Experiment: Chloramphenicol 0.0075 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03650 and PS417_03655 overlap by 4 nucleotides PS417_03655 and PS417_03660 overlap by 4 nucleotides PS417_03660 and PS417_03665 overlap by 8 nucleotides
PS417_03650: PS417_03650 - FAD-dependent oxidoreductase, at 827,137 to 828,384
_03650
PS417_03655: PS417_03655 - short-chain dehydrogenase, at 828,381 to 829,163
_03655
PS417_03660: PS417_03660 - transcriptional regulator, at 829,160 to 829,582
_03660
PS417_03665: PS417_03665 - deoxyribodipyrimidine photolyase, at 829,575 to 831,020
_03665
Position (kb) 828
829
830 Strain fitness (log2 ratio) -2
-1
0
1 at 827.411 kb on + strand, within PS417_03650 at 827.412 kb on - strand, within PS417_03650 at 827.412 kb on - strand, within PS417_03650 at 827.412 kb on - strand, within PS417_03650 at 827.412 kb on - strand, within PS417_03650 at 827.412 kb on - strand, within PS417_03650 at 827.744 kb on + strand, within PS417_03650 at 827.744 kb on + strand, within PS417_03650 at 827.745 kb on - strand, within PS417_03650 at 827.745 kb on - strand, within PS417_03650 at 827.745 kb on - strand, within PS417_03650 at 827.745 kb on - strand, within PS417_03650 at 827.745 kb on - strand, within PS417_03650 at 827.900 kb on + strand, within PS417_03650 at 827.901 kb on - strand, within PS417_03650 at 827.901 kb on - strand, within PS417_03650 at 828.173 kb on - strand, within PS417_03650 at 828.194 kb on + strand, within PS417_03650 at 828.216 kb on + strand, within PS417_03650 at 828.236 kb on + strand, within PS417_03650 at 828.243 kb on + strand, within PS417_03650 at 828.273 kb on + strand at 828.273 kb on + strand at 828.336 kb on - strand at 828.384 kb on + strand at 828.384 kb on + strand at 828.384 kb on + strand at 828.385 kb on - strand at 828.385 kb on - strand at 828.385 kb on - strand at 828.683 kb on - strand, within PS417_03655 at 828.709 kb on + strand, within PS417_03655 at 828.709 kb on + strand, within PS417_03655 at 828.709 kb on + strand, within PS417_03655 at 828.815 kb on - strand, within PS417_03655 at 829.016 kb on - strand, within PS417_03655 at 829.218 kb on + strand, within PS417_03660 at 829.218 kb on + strand, within PS417_03660 at 829.219 kb on - strand, within PS417_03660 at 829.242 kb on + strand, within PS417_03660 at 829.243 kb on - strand, within PS417_03660 at 829.258 kb on - strand, within PS417_03660 at 829.422 kb on + strand, within PS417_03660 at 829.422 kb on + strand, within PS417_03660 at 829.422 kb on + strand, within PS417_03660 at 829.438 kb on - strand, within PS417_03660 at 829.825 kb on + strand, within PS417_03665 at 829.826 kb on - strand, within PS417_03665 at 829.826 kb on - strand, within PS417_03665
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0075 mg/ml remove 827,411 + PS417_03650 0.22 -0.1 827,412 - PS417_03650 0.22 -0.2 827,412 - PS417_03650 0.22 -0.1 827,412 - PS417_03650 0.22 +0.7 827,412 - PS417_03650 0.22 -0.1 827,412 - PS417_03650 0.22 +0.0 827,744 + PS417_03650 0.49 +0.0 827,744 + PS417_03650 0.49 +0.9 827,745 - PS417_03650 0.49 +0.4 827,745 - PS417_03650 0.49 -0.2 827,745 - PS417_03650 0.49 -0.6 827,745 - PS417_03650 0.49 +0.1 827,745 - PS417_03650 0.49 +0.1 827,900 + PS417_03650 0.61 -0.1 827,901 - PS417_03650 0.61 +0.2 827,901 - PS417_03650 0.61 +0.5 828,173 - PS417_03650 0.83 -0.5 828,194 + PS417_03650 0.85 -1.2 828,216 + PS417_03650 0.86 -0.1 828,236 + PS417_03650 0.88 -0.9 828,243 + PS417_03650 0.89 -0.2 828,273 + -0.5 828,273 + +0.5 828,336 - +0.1 828,384 + +0.0 828,384 + +0.1 828,384 + +0.4 828,385 - -0.6 828,385 - +0.4 828,385 - -0.3 828,683 - PS417_03655 0.39 -1.5 828,709 + PS417_03655 0.42 -0.1 828,709 + PS417_03655 0.42 -1.9 828,709 + PS417_03655 0.42 -0.9 828,815 - PS417_03655 0.55 -0.2 829,016 - PS417_03655 0.81 +1.4 829,218 + PS417_03660 0.14 -0.0 829,218 + PS417_03660 0.14 -1.4 829,219 - PS417_03660 0.14 +0.8 829,242 + PS417_03660 0.19 +0.0 829,243 - PS417_03660 0.20 -0.7 829,258 - PS417_03660 0.23 +0.0 829,422 + PS417_03660 0.62 -0.9 829,422 + PS417_03660 0.62 +0.9 829,422 + PS417_03660 0.62 +0.2 829,438 - PS417_03660 0.66 -0.0 829,825 + PS417_03665 0.17 -0.4 829,826 - PS417_03665 0.17 -0.0 829,826 - PS417_03665 0.17 +0.2
Or see this region's nucleotide sequence