Experiment: Chloramphenicol 0.0075 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_25210 and PS417_25215 are separated by 93 nucleotides PS417_25215 and PS417_25220 are separated by 43 nucleotides PS417_25220 and PS417_25225 overlap by 4 nucleotides PS417_25225 and PS417_25230 overlap by 4 nucleotides
PS417_25210: PS417_25210 - TonB-dependent receptor, at 5,464,407 to 5,466,302
_25210
PS417_25215: PS417_25215 - hypothetical protein, at 5,466,396 to 5,466,602
_25215
PS417_25220: PS417_25220 - iron-hydroxamate ABC transporter substrate-binding protein, at 5,466,646 to 5,467,434
_25220
PS417_25225: PS417_25225 - MFS transporter, at 5,467,431 to 5,467,850
_25225
PS417_25230: PS417_25230 - GTP cyclohydrolase, at 5,467,847 to 5,468,464
_25230
Position (kb)
5466
5467
5468 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5465.646 kb on + strand, within PS417_25210 at 5465.647 kb on - strand, within PS417_25210 at 5465.647 kb on - strand, within PS417_25210 at 5465.685 kb on + strand, within PS417_25210 at 5465.685 kb on + strand, within PS417_25210 at 5465.685 kb on + strand, within PS417_25210 at 5465.686 kb on - strand, within PS417_25210 at 5465.686 kb on - strand, within PS417_25210 at 5465.704 kb on - strand, within PS417_25210 at 5465.994 kb on - strand, within PS417_25210 at 5466.069 kb on + strand, within PS417_25210 at 5466.192 kb on + strand at 5466.192 kb on + strand at 5466.193 kb on - strand at 5466.193 kb on - strand at 5466.208 kb on - strand at 5466.209 kb on + strand at 5466.209 kb on + strand at 5466.209 kb on + strand at 5466.209 kb on + strand at 5466.210 kb on - strand at 5466.210 kb on - strand at 5466.210 kb on - strand at 5466.210 kb on - strand at 5466.210 kb on - strand at 5466.213 kb on + strand at 5466.213 kb on + strand at 5466.213 kb on + strand at 5466.213 kb on + strand at 5466.213 kb on + strand at 5466.213 kb on + strand at 5466.214 kb on - strand at 5466.214 kb on - strand at 5466.214 kb on - strand at 5466.214 kb on - strand at 5466.214 kb on - strand at 5466.214 kb on - strand at 5466.214 kb on - strand at 5466.229 kb on - strand at 5466.655 kb on - strand at 5466.933 kb on + strand, within PS417_25220 at 5466.936 kb on - strand, within PS417_25220 at 5466.936 kb on - strand, within PS417_25220 at 5466.953 kb on - strand, within PS417_25220 at 5467.107 kb on + strand, within PS417_25220 at 5467.213 kb on + strand, within PS417_25220 at 5467.438 kb on - strand at 5467.462 kb on + strand at 5467.462 kb on + strand at 5467.463 kb on - strand at 5467.463 kb on - strand at 5467.658 kb on + strand, within PS417_25225 at 5467.658 kb on + strand, within PS417_25225 at 5467.802 kb on - strand, within PS417_25225
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0075 mg/ml remove 5,465,646 + PS417_25210 0.65 -0.9 5,465,647 - PS417_25210 0.65 -2.1 5,465,647 - PS417_25210 0.65 +1.8 5,465,685 + PS417_25210 0.67 -0.9 5,465,685 + PS417_25210 0.67 +0.2 5,465,685 + PS417_25210 0.67 +0.0 5,465,686 - PS417_25210 0.67 -0.1 5,465,686 - PS417_25210 0.67 -0.1 5,465,704 - PS417_25210 0.68 -1.0 5,465,994 - PS417_25210 0.84 -1.4 5,466,069 + PS417_25210 0.88 +0.6 5,466,192 + -0.2 5,466,192 + +1.4 5,466,193 - -0.3 5,466,193 - -0.3 5,466,208 - -0.2 5,466,209 + -1.1 5,466,209 + -2.7 5,466,209 + +0.7 5,466,209 + +0.1 5,466,210 - +0.8 5,466,210 - -0.3 5,466,210 - -0.1 5,466,210 - -0.0 5,466,210 - +0.9 5,466,213 + -0.1 5,466,213 + +0.2 5,466,213 + -0.2 5,466,213 + +1.4 5,466,213 + -0.2 5,466,213 + +0.2 5,466,214 - -0.7 5,466,214 - -0.2 5,466,214 - +0.0 5,466,214 - -0.4 5,466,214 - +0.4 5,466,214 - -1.1 5,466,214 - +0.6 5,466,229 - -0.4 5,466,655 - +0.9 5,466,933 + PS417_25220 0.36 -0.8 5,466,936 - PS417_25220 0.37 -0.5 5,466,936 - PS417_25220 0.37 -0.2 5,466,953 - PS417_25220 0.39 -0.5 5,467,107 + PS417_25220 0.58 -0.6 5,467,213 + PS417_25220 0.72 -0.3 5,467,438 - +0.2 5,467,462 + +1.4 5,467,462 + +0.5 5,467,463 - -0.3 5,467,463 - -0.8 5,467,658 + PS417_25225 0.54 +1.2 5,467,658 + PS417_25225 0.54 -1.6 5,467,802 - PS417_25225 0.88 +0.2
Or see this region's nucleotide sequence