Experiment: Chloramphenicol 0.0075 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24570 and PS417_24575 are separated by 202 nucleotides PS417_24575 and PS417_24580 overlap by 6 nucleotides PS417_24580 and PS417_24585 are separated by 71 nucleotides
PS417_24570: PS417_24570 - AsnC family transcriptional regulator, at 5,331,595 to 5,332,074
_24570
PS417_24575: PS417_24575 - hypothetical protein, at 5,332,277 to 5,332,486
_24575
PS417_24580: PS417_24580 - pseudouridine synthase, at 5,332,481 to 5,333,116
_24580
PS417_24585: PS417_24585 - AMP nucleosidase, at 5,333,188 to 5,334,651
_24585
Position (kb) 5332
5333
5334 Strain fitness (log2 ratio) -2
-1
0
1 at 5331.481 kb on + strand at 5331.739 kb on + strand, within PS417_24570 at 5331.739 kb on + strand, within PS417_24570 at 5331.739 kb on + strand, within PS417_24570 at 5331.739 kb on + strand, within PS417_24570 at 5331.740 kb on - strand, within PS417_24570 at 5331.740 kb on - strand, within PS417_24570 at 5331.800 kb on - strand, within PS417_24570 at 5332.089 kb on + strand at 5332.089 kb on + strand at 5332.089 kb on + strand at 5332.090 kb on - strand at 5332.090 kb on - strand at 5332.090 kb on - strand at 5332.143 kb on + strand at 5332.143 kb on + strand at 5332.144 kb on - strand at 5332.144 kb on - strand at 5332.144 kb on - strand at 5332.144 kb on - strand at 5332.235 kb on + strand at 5332.237 kb on + strand at 5332.349 kb on - strand, within PS417_24575 at 5332.483 kb on - strand at 5332.483 kb on - strand at 5332.484 kb on + strand at 5332.485 kb on - strand at 5332.485 kb on - strand at 5332.485 kb on - strand at 5332.601 kb on + strand, within PS417_24580 at 5332.613 kb on - strand, within PS417_24580 at 5332.644 kb on + strand, within PS417_24580 at 5332.653 kb on - strand, within PS417_24580 at 5333.002 kb on + strand, within PS417_24580 at 5333.132 kb on - strand at 5333.169 kb on - strand at 5333.309 kb on + strand at 5333.309 kb on + strand at 5333.310 kb on - strand at 5333.510 kb on + strand, within PS417_24585 at 5333.511 kb on - strand, within PS417_24585 at 5333.511 kb on - strand, within PS417_24585 at 5333.602 kb on + strand, within PS417_24585 at 5333.602 kb on + strand, within PS417_24585 at 5333.603 kb on - strand, within PS417_24585 at 5333.603 kb on - strand, within PS417_24585 at 5333.672 kb on + strand, within PS417_24585 at 5333.672 kb on + strand, within PS417_24585 at 5333.672 kb on + strand, within PS417_24585 at 5333.672 kb on + strand, within PS417_24585 at 5333.672 kb on + strand, within PS417_24585 at 5333.672 kb on + strand, within PS417_24585 at 5333.673 kb on - strand, within PS417_24585 at 5333.673 kb on - strand, within PS417_24585 at 5333.673 kb on - strand, within PS417_24585 at 5333.673 kb on - strand, within PS417_24585 at 5333.673 kb on - strand, within PS417_24585 at 5334.020 kb on + strand, within PS417_24585 at 5334.021 kb on - strand, within PS417_24585 at 5334.021 kb on - strand, within PS417_24585 at 5334.029 kb on + strand, within PS417_24585 at 5334.030 kb on - strand, within PS417_24585 at 5334.080 kb on + strand, within PS417_24585 at 5334.080 kb on + strand, within PS417_24585
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0075 mg/ml remove 5,331,481 + -2.1 5,331,739 + PS417_24570 0.30 -0.5 5,331,739 + PS417_24570 0.30 -0.0 5,331,739 + PS417_24570 0.30 -0.7 5,331,739 + PS417_24570 0.30 -0.3 5,331,740 - PS417_24570 0.30 +0.3 5,331,740 - PS417_24570 0.30 +0.8 5,331,800 - PS417_24570 0.43 +0.0 5,332,089 + -1.8 5,332,089 + -0.2 5,332,089 + +0.1 5,332,090 - +0.0 5,332,090 - -0.3 5,332,090 - -0.2 5,332,143 + -0.5 5,332,143 + +0.2 5,332,144 - -0.1 5,332,144 - -1.1 5,332,144 - +0.0 5,332,144 - +0.1 5,332,235 + -0.8 5,332,237 + -0.3 5,332,349 - PS417_24575 0.34 +0.0 5,332,483 - +0.3 5,332,483 - +0.3 5,332,484 + -0.2 5,332,485 - -0.9 5,332,485 - -0.2 5,332,485 - +0.3 5,332,601 + PS417_24580 0.19 -1.4 5,332,613 - PS417_24580 0.21 -0.4 5,332,644 + PS417_24580 0.26 -1.1 5,332,653 - PS417_24580 0.27 -0.4 5,333,002 + PS417_24580 0.82 +0.5 5,333,132 - -1.0 5,333,169 - +0.3 5,333,309 + -0.0 5,333,309 + +0.2 5,333,310 - -0.9 5,333,510 + PS417_24585 0.22 -0.3 5,333,511 - PS417_24585 0.22 +0.5 5,333,511 - PS417_24585 0.22 -0.4 5,333,602 + PS417_24585 0.28 +0.9 5,333,602 + PS417_24585 0.28 -0.2 5,333,603 - PS417_24585 0.28 -0.3 5,333,603 - PS417_24585 0.28 -0.7 5,333,672 + PS417_24585 0.33 +0.9 5,333,672 + PS417_24585 0.33 -1.0 5,333,672 + PS417_24585 0.33 -1.0 5,333,672 + PS417_24585 0.33 +0.4 5,333,672 + PS417_24585 0.33 +0.3 5,333,672 + PS417_24585 0.33 -0.6 5,333,673 - PS417_24585 0.33 -0.5 5,333,673 - PS417_24585 0.33 -0.0 5,333,673 - PS417_24585 0.33 +0.2 5,333,673 - PS417_24585 0.33 +0.3 5,333,673 - PS417_24585 0.33 -0.1 5,334,020 + PS417_24585 0.57 -0.2 5,334,021 - PS417_24585 0.57 -0.3 5,334,021 - PS417_24585 0.57 -1.0 5,334,029 + PS417_24585 0.57 -0.7 5,334,030 - PS417_24585 0.58 -0.9 5,334,080 + PS417_24585 0.61 +0.5 5,334,080 + PS417_24585 0.61 -0.2
Or see this region's nucleotide sequence