Experiment: Chloramphenicol 0.0075 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24285 and PS417_24290 are separated by 156 nucleotides PS417_24290 and PS417_24295 are separated by 15 nucleotides
PS417_24285: PS417_24285 - GTP-binding protein, at 5,271,426 to 5,272,385
_24285
PS417_24290: PS417_24290 - hypothetical protein, at 5,272,542 to 5,272,739
_24290
PS417_24295: PS417_24295 - carbon starvation protein A, at 5,272,755 to 5,274,821
_24295
Position (kb) 5272
5273 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5271.551 kb on - strand, within PS417_24285 at 5271.786 kb on + strand, within PS417_24285 at 5271.786 kb on + strand, within PS417_24285 at 5271.786 kb on + strand, within PS417_24285 at 5271.787 kb on - strand, within PS417_24285 at 5271.787 kb on - strand, within PS417_24285 at 5271.787 kb on - strand, within PS417_24285 at 5272.021 kb on + strand, within PS417_24285 at 5272.021 kb on + strand, within PS417_24285 at 5272.022 kb on - strand, within PS417_24285 at 5272.151 kb on - strand, within PS417_24285 at 5272.402 kb on - strand at 5272.402 kb on - strand at 5272.455 kb on + strand at 5272.455 kb on + strand at 5272.455 kb on + strand at 5272.469 kb on + strand at 5272.469 kb on + strand at 5272.469 kb on + strand at 5272.470 kb on - strand at 5272.470 kb on - strand at 5272.470 kb on - strand at 5272.470 kb on - strand at 5272.470 kb on - strand at 5272.554 kb on - strand at 5272.610 kb on - strand, within PS417_24290 at 5272.610 kb on - strand, within PS417_24290 at 5272.646 kb on + strand, within PS417_24290 at 5272.657 kb on + strand, within PS417_24290 at 5272.657 kb on + strand, within PS417_24290 at 5272.657 kb on + strand, within PS417_24290 at 5272.658 kb on - strand, within PS417_24290 at 5272.791 kb on - strand at 5272.840 kb on + strand at 5272.840 kb on + strand at 5272.897 kb on + strand at 5272.978 kb on + strand, within PS417_24295 at 5273.093 kb on + strand, within PS417_24295 at 5273.094 kb on - strand, within PS417_24295 at 5273.095 kb on + strand, within PS417_24295 at 5273.645 kb on - strand, within PS417_24295 at 5273.728 kb on + strand, within PS417_24295
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0075 mg/ml remove 5,271,551 - PS417_24285 0.13 -0.7 5,271,786 + PS417_24285 0.38 +0.8 5,271,786 + PS417_24285 0.38 +0.5 5,271,786 + PS417_24285 0.38 +2.0 5,271,787 - PS417_24285 0.38 -1.1 5,271,787 - PS417_24285 0.38 +0.2 5,271,787 - PS417_24285 0.38 +0.2 5,272,021 + PS417_24285 0.62 -0.5 5,272,021 + PS417_24285 0.62 -0.4 5,272,022 - PS417_24285 0.62 +0.4 5,272,151 - PS417_24285 0.76 +0.1 5,272,402 - -0.0 5,272,402 - +1.3 5,272,455 + -0.4 5,272,455 + +1.3 5,272,455 + +0.3 5,272,469 + -0.1 5,272,469 + +0.1 5,272,469 + -0.5 5,272,470 - +0.3 5,272,470 - -2.4 5,272,470 - +1.3 5,272,470 - +2.0 5,272,470 - +0.2 5,272,554 - +0.5 5,272,610 - PS417_24290 0.34 -0.3 5,272,610 - PS417_24290 0.34 -0.1 5,272,646 + PS417_24290 0.53 -1.9 5,272,657 + PS417_24290 0.58 -0.7 5,272,657 + PS417_24290 0.58 -0.9 5,272,657 + PS417_24290 0.58 -1.2 5,272,658 - PS417_24290 0.59 +0.0 5,272,791 - +0.4 5,272,840 + +0.7 5,272,840 + +2.5 5,272,897 + -0.6 5,272,978 + PS417_24295 0.11 +2.9 5,273,093 + PS417_24295 0.16 -0.0 5,273,094 - PS417_24295 0.16 -0.2 5,273,095 + PS417_24295 0.16 +0.5 5,273,645 - PS417_24295 0.43 +0.2 5,273,728 + PS417_24295 0.47 -0.4
Or see this region's nucleotide sequence