Strain Fitness in Pseudomonas simiae WCS417 around PS417_22300
Experiment: Chloramphenicol 0.0075 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Chloramphenicol 0.0075 mg/ml |
---|---|---|---|---|---|
remove | |||||
4,828,755 | + | -0.0 | |||
4,828,755 | + | +0.2 | |||
4,828,756 | - | -0.2 | |||
4,829,400 | - | -0.0 | |||
4,829,400 | - | -0.4 | |||
4,829,402 | + | -0.4 | |||
4,829,402 | + | +0.2 | |||
4,829,403 | - | -0.2 | |||
4,829,403 | - | +1.8 | |||
4,829,403 | - | +1.6 | |||
4,829,552 | + | -0.4 | |||
4,829,634 | + | -0.3 | |||
4,829,634 | + | -0.3 | |||
4,829,933 | - | PS417_22300 | 0.55 | -0.8 | |
4,830,139 | + | +0.3 | |||
4,830,140 | - | +0.2 | |||
4,830,293 | + | -0.3 | |||
4,830,293 | + | +0.4 | |||
4,830,294 | - | -0.8 | |||
4,830,427 | - | PS417_22305 | 0.16 | -0.8 | |
4,830,567 | + | PS417_22305 | 0.27 | -0.1 | |
4,830,606 | + | PS417_22305 | 0.29 | -0.8 | |
4,830,606 | + | PS417_22305 | 0.29 | -0.0 | |
4,830,606 | + | PS417_22305 | 0.29 | -0.3 | |
4,830,783 | + | PS417_22305 | 0.43 | +0.3 | |
4,830,784 | - | PS417_22305 | 0.43 | -0.4 | |
4,830,951 | - | PS417_22305 | 0.55 | -0.3 |
Or see this region's nucleotide sequence