Experiment: Chloramphenicol 0.0075 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_20990 and PS417_20995 are separated by 87 nucleotides PS417_20995 and PS417_21000 are separated by 2 nucleotides PS417_21000 and PS417_21005 are separated by 86 nucleotides
PS417_20990: PS417_20990 - RNA polymerase sigma factor SigX, at 4,566,528 to 4,567,118
_20990
PS417_20995: PS417_20995 - transporter, at 4,567,206 to 4,568,030
_20995
PS417_21000: PS417_21000 - CrfX protein, at 4,568,033 to 4,568,278
_21000
PS417_21005: PS417_21005 - CmaX protein, at 4,568,365 to 4,569,360
_21005
Position (kb)
4568
4569 Strain fitness (log2 ratio)
-1
0
1 at 4567.088 kb on - strand at 4567.190 kb on - strand at 4567.517 kb on + strand, within PS417_20995 at 4568.069 kb on - strand, within PS417_21000 at 4568.087 kb on + strand, within PS417_21000 at 4568.088 kb on - strand, within PS417_21000 at 4568.332 kb on + strand at 4568.333 kb on - strand at 4568.333 kb on - strand at 4568.345 kb on - strand at 4568.358 kb on - strand at 4568.358 kb on - strand at 4568.546 kb on + strand, within PS417_21005 at 4568.673 kb on - strand, within PS417_21005 at 4568.810 kb on + strand, within PS417_21005 at 4568.811 kb on - strand, within PS417_21005 at 4568.886 kb on + strand, within PS417_21005 at 4568.908 kb on - strand, within PS417_21005 at 4568.908 kb on - strand, within PS417_21005 at 4568.909 kb on + strand, within PS417_21005 at 4568.909 kb on + strand at 4568.910 kb on - strand, within PS417_21005 at 4568.910 kb on - strand, within PS417_21005 at 4568.910 kb on - strand, within PS417_21005
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0075 mg/ml remove 4,567,088 - -0.5 4,567,190 - -0.8 4,567,517 + PS417_20995 0.38 +0.3 4,568,069 - PS417_21000 0.15 -0.6 4,568,087 + PS417_21000 0.22 -0.6 4,568,088 - PS417_21000 0.22 -0.1 4,568,332 + +0.6 4,568,333 - +1.0 4,568,333 - -0.2 4,568,345 - +0.2 4,568,358 - +0.5 4,568,358 - -0.5 4,568,546 + PS417_21005 0.18 -0.3 4,568,673 - PS417_21005 0.31 -0.8 4,568,810 + PS417_21005 0.45 -0.0 4,568,811 - PS417_21005 0.45 +0.1 4,568,886 + PS417_21005 0.52 +1.5 4,568,908 - PS417_21005 0.55 +0.6 4,568,908 - PS417_21005 0.55 -0.8 4,568,909 + PS417_21005 0.55 -0.1 4,568,909 + -0.3 4,568,910 - PS417_21005 0.55 +0.1 4,568,910 - PS417_21005 0.55 -0.4 4,568,910 - PS417_21005 0.55 +0.6
Or see this region's nucleotide sequence