Experiment: Chloramphenicol 0.0075 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_19695 and PS417_19700 overlap by 4 nucleotides PS417_19700 and PS417_19705 are separated by 106 nucleotides PS417_19705 and PS417_19710 are separated by 12 nucleotides
PS417_19695: PS417_19695 - flagellar biosynthesis sigma factor, at 4,280,216 to 4,280,956
_19695
PS417_19700: PS417_19700 - cobyrinic acid a,c-diamide synthase, at 4,280,953 to 4,281,786
_19700
PS417_19705: PS417_19705 - flagellar biosynthesis regulator FlhF, at 4,281,893 to 4,283,209
_19705
PS417_19710: PS417_19710 - flagellar biosynthesis protein FlhA, at 4,283,222 to 4,285,351
_19710
Position (kb)
4281
4282
4283
4284 Strain fitness (log2 ratio)
-1
0
1 at 4280.941 kb on - strand at 4280.956 kb on + strand at 4281.823 kb on - strand at 4281.864 kb on - strand at 4282.474 kb on - strand, within PS417_19705 at 4282.482 kb on - strand, within PS417_19705 at 4283.074 kb on - strand, within PS417_19705 at 4283.498 kb on + strand, within PS417_19710 at 4283.499 kb on - strand at 4283.552 kb on + strand, within PS417_19710 at 4283.552 kb on + strand at 4283.552 kb on + strand, within PS417_19710 at 4283.552 kb on + strand, within PS417_19710 at 4283.614 kb on + strand, within PS417_19710 at 4283.835 kb on + strand, within PS417_19710 at 4283.836 kb on - strand, within PS417_19710 at 4283.836 kb on - strand, within PS417_19710 at 4283.969 kb on - strand, within PS417_19710 at 4284.027 kb on + strand, within PS417_19710
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0075 mg/ml remove 4,280,941 - -0.1 4,280,956 + +0.7 4,281,823 - -0.1 4,281,864 - -1.5 4,282,474 - PS417_19705 0.44 -1.5 4,282,482 - PS417_19705 0.45 -0.2 4,283,074 - PS417_19705 0.90 -0.6 4,283,498 + PS417_19710 0.13 -0.5 4,283,499 - +0.3 4,283,552 + PS417_19710 0.15 +0.9 4,283,552 + +0.2 4,283,552 + PS417_19710 0.15 +0.4 4,283,552 + PS417_19710 0.15 -0.3 4,283,614 + PS417_19710 0.18 -0.3 4,283,835 + PS417_19710 0.29 +0.6 4,283,836 - PS417_19710 0.29 -0.7 4,283,836 - PS417_19710 0.29 +0.5 4,283,969 - PS417_19710 0.35 -1.4 4,284,027 + PS417_19710 0.38 +0.1
Or see this region's nucleotide sequence