Strain Fitness in Pseudomonas simiae WCS417 around PS417_18765

Experiment: Chloramphenicol 0.0075 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_18755 and PS417_18760 are separated by 130 nucleotidesPS417_18760 and PS417_18765 are separated by 68 nucleotidesPS417_18765 and PS417_18770 are separated by 298 nucleotides PS417_18755: PS417_18755 - CrtK, at 4,069,339 to 4,069,779 _18755 PS417_18760: PS417_18760 - hypothetical protein, at 4,069,910 to 4,070,479 _18760 PS417_18765: PS417_18765 - hypothetical protein, at 4,070,548 to 4,070,781 _18765 PS417_18770: PS417_18770 - hypothetical protein, at 4,071,080 to 4,072,063 _18770 Position (kb) 4070 4071Strain fitness (log2 ratio) -1 0 1 2at 4069.634 kb on + strand, within PS417_18755at 4069.720 kb on - strand, within PS417_18755at 4069.820 kb on + strandat 4069.820 kb on + strandat 4069.820 kb on + strandat 4069.820 kb on + strandat 4069.821 kb on - strandat 4069.821 kb on - strandat 4069.821 kb on - strandat 4069.821 kb on - strandat 4069.821 kb on - strandat 4069.958 kb on - strandat 4069.958 kb on - strandat 4069.978 kb on + strand, within PS417_18760at 4070.055 kb on + strand, within PS417_18760at 4070.055 kb on + strand, within PS417_18760at 4070.055 kb on + strand, within PS417_18760at 4070.289 kb on + strand, within PS417_18760at 4070.302 kb on - strand, within PS417_18760at 4070.542 kb on + strandat 4070.600 kb on + strand, within PS417_18765at 4070.600 kb on + strand, within PS417_18765at 4070.601 kb on - strand, within PS417_18765at 4070.601 kb on - strand, within PS417_18765at 4070.601 kb on - strand, within PS417_18765at 4070.746 kb on + strand, within PS417_18765at 4070.747 kb on - strand, within PS417_18765at 4070.843 kb on - strandat 4070.843 kb on - strandat 4070.969 kb on - strandat 4071.005 kb on + strandat 4071.020 kb on - strandat 4071.131 kb on + strandat 4071.437 kb on + strand, within PS417_18770at 4071.537 kb on + strand, within PS417_18770at 4071.581 kb on - strand, within PS417_18770at 4071.701 kb on + strand, within PS417_18770at 4071.701 kb on + strand, within PS417_18770at 4071.748 kb on + strandat 4071.770 kb on + strand, within PS417_18770at 4071.771 kb on - strand, within PS417_18770

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.0075 mg/ml
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4,069,634 + PS417_18755 0.67 +0.0
4,069,720 - PS417_18755 0.86 -0.2
4,069,820 + -1.3
4,069,820 + +0.3
4,069,820 + +0.0
4,069,820 + +0.7
4,069,821 - -0.2
4,069,821 - -0.0
4,069,821 - -0.2
4,069,821 - +0.8
4,069,821 - +0.3
4,069,958 - -0.0
4,069,958 - -0.2
4,069,978 + PS417_18760 0.12 +1.8
4,070,055 + PS417_18760 0.25 +0.2
4,070,055 + PS417_18760 0.25 +0.3
4,070,055 + PS417_18760 0.25 +1.7
4,070,289 + PS417_18760 0.66 -0.3
4,070,302 - PS417_18760 0.69 -0.0
4,070,542 + -0.9
4,070,600 + PS417_18765 0.22 -0.5
4,070,600 + PS417_18765 0.22 -0.2
4,070,601 - PS417_18765 0.23 -0.0
4,070,601 - PS417_18765 0.23 -0.5
4,070,601 - PS417_18765 0.23 -1.0
4,070,746 + PS417_18765 0.85 -0.7
4,070,747 - PS417_18765 0.85 -1.0
4,070,843 - +0.7
4,070,843 - +0.6
4,070,969 - +0.1
4,071,005 + -0.1
4,071,020 - +2.3
4,071,131 + -0.1
4,071,437 + PS417_18770 0.36 -0.3
4,071,537 + PS417_18770 0.46 -0.3
4,071,581 - PS417_18770 0.51 -1.3
4,071,701 + PS417_18770 0.63 +1.2
4,071,701 + PS417_18770 0.63 +1.0
4,071,748 + +2.3
4,071,770 + PS417_18770 0.70 -0.7
4,071,771 - PS417_18770 0.70 -1.0

Or see this region's nucleotide sequence