Strain Fitness in Pseudomonas simiae WCS417 around PS417_17415
Experiment: Chloramphenicol 0.0075 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Chloramphenicol 0.0075 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,803,440 | + | PS417_17410 | 0.44 | -0.2 | |
3,803,608 | - | PS417_17410 | 0.55 | -0.6 | |
3,804,087 | - | PS417_17410 | 0.88 | -0.2 | |
3,804,087 | - | PS417_17410 | 0.88 | +0.0 | |
3,804,087 | - | PS417_17410 | 0.88 | +0.5 | |
3,804,205 | + | +0.1 | |||
3,804,549 | + | PS417_17415 | 0.15 | -1.5 | |
3,804,550 | - | PS417_17415 | 0.15 | -0.1 | |
3,804,732 | - | -1.1 | |||
3,805,420 | + | PS417_17415 | 0.78 | -0.5 | |
3,805,421 | - | PS417_17415 | 0.78 | +0.3 | |
3,805,583 | - | +0.5 | |||
3,805,585 | - | -0.7 | |||
3,806,017 | - | PS417_17420 | 0.27 | -0.3 | |
3,806,358 | - | +0.7 | |||
3,806,603 | - | PS417_17420 | 0.77 | +0.2 | |
3,806,668 | + | PS417_17420 | 0.83 | -0.3 | |
3,806,668 | - | PS417_17420 | 0.83 | -0.3 |
Or see this region's nucleotide sequence