Experiment: Chloramphenicol 0.0075 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01420 and PS417_01425 are separated by 451 nucleotides PS417_01425 and PS417_01430 are separated by 533 nucleotides
PS417_01420: PS417_01420 - histidine kinase, at 314,177 to 315,547
_01420
PS417_01425: PS417_01425 - AraC family transcriptional regulator, at 315,999 to 316,868
_01425
PS417_01430: PS417_01430 - chromosome segregation protein SMC, at 317,402 to 319,762
_01430
Position (kb) 315
316
317 Strain fitness (log2 ratio) -2
-1
0
1 at 315.257 kb on + strand, within PS417_01420 at 315.258 kb on - strand, within PS417_01420 at 315.260 kb on + strand, within PS417_01420 at 315.260 kb on + strand, within PS417_01420 at 315.260 kb on + strand, within PS417_01420 at 315.260 kb on + strand, within PS417_01420 at 315.261 kb on - strand, within PS417_01420 at 315.275 kb on + strand, within PS417_01420 at 315.276 kb on - strand, within PS417_01420 at 315.339 kb on - strand, within PS417_01420 at 315.358 kb on - strand, within PS417_01420 at 315.430 kb on + strand at 315.430 kb on + strand at 315.474 kb on + strand at 315.521 kb on + strand at 315.522 kb on - strand at 315.532 kb on + strand at 315.532 kb on + strand at 315.533 kb on - strand at 315.533 kb on - strand at 315.533 kb on - strand at 315.533 kb on - strand at 315.533 kb on - strand at 315.533 kb on - strand at 315.639 kb on - strand at 315.639 kb on - strand at 315.641 kb on + strand at 315.695 kb on + strand at 315.749 kb on + strand at 315.749 kb on + strand at 315.749 kb on + strand at 315.965 kb on + strand at 315.965 kb on + strand at 315.965 kb on + strand at 315.978 kb on - strand at 316.026 kb on + strand at 316.056 kb on + strand at 316.056 kb on + strand at 316.156 kb on + strand, within PS417_01425 at 316.177 kb on - strand, within PS417_01425 at 316.177 kb on - strand, within PS417_01425 at 316.196 kb on - strand, within PS417_01425 at 316.362 kb on - strand, within PS417_01425 at 316.362 kb on - strand, within PS417_01425 at 316.395 kb on - strand, within PS417_01425 at 316.595 kb on - strand, within PS417_01425 at 316.851 kb on + strand at 316.852 kb on - strand at 316.852 kb on - strand at 316.852 kb on - strand at 316.998 kb on + strand at 316.998 kb on + strand at 316.999 kb on - strand at 316.999 kb on - strand at 317.022 kb on + strand at 317.022 kb on + strand at 317.023 kb on - strand at 317.023 kb on - strand at 317.101 kb on + strand at 317.146 kb on - strand at 317.155 kb on + strand at 317.156 kb on - strand at 317.158 kb on + strand at 317.158 kb on + strand at 317.158 kb on + strand at 317.159 kb on - strand at 317.159 kb on - strand at 317.177 kb on + strand at 317.227 kb on - strand at 317.291 kb on + strand at 317.292 kb on - strand at 317.292 kb on - strand at 317.707 kb on + strand, within PS417_01430
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0075 mg/ml remove 315,257 + PS417_01420 0.79 -0.3 315,258 - PS417_01420 0.79 +0.2 315,260 + PS417_01420 0.79 +0.4 315,260 + PS417_01420 0.79 -1.4 315,260 + PS417_01420 0.79 +0.1 315,260 + PS417_01420 0.79 -0.0 315,261 - PS417_01420 0.79 +0.3 315,275 + PS417_01420 0.80 -0.2 315,276 - PS417_01420 0.80 +0.0 315,339 - PS417_01420 0.85 -0.8 315,358 - PS417_01420 0.86 +0.5 315,430 + -0.0 315,430 + -0.1 315,474 + +0.8 315,521 + +0.4 315,522 - -0.1 315,532 + +0.1 315,532 + +0.7 315,533 - +0.3 315,533 - +1.7 315,533 - -0.4 315,533 - +1.3 315,533 - +0.4 315,533 - +0.4 315,639 - +1.3 315,639 - -0.2 315,641 + -0.0 315,695 + +0.5 315,749 + -0.2 315,749 + +1.7 315,749 + -0.4 315,965 + +0.2 315,965 + -0.4 315,965 + -0.2 315,978 - +1.5 316,026 + -0.0 316,056 + -0.2 316,056 + +0.7 316,156 + PS417_01425 0.18 -0.8 316,177 - PS417_01425 0.20 +0.5 316,177 - PS417_01425 0.20 -0.7 316,196 - PS417_01425 0.23 -0.7 316,362 - PS417_01425 0.42 -1.6 316,362 - PS417_01425 0.42 -1.5 316,395 - PS417_01425 0.46 +0.9 316,595 - PS417_01425 0.69 -1.0 316,851 + -1.6 316,852 - -0.7 316,852 - -0.5 316,852 - +0.5 316,998 + -0.1 316,998 + -1.8 316,999 - -0.8 316,999 - +0.0 317,022 + -0.1 317,022 + -0.3 317,023 - -0.7 317,023 - +0.1 317,101 + +0.2 317,146 - +0.4 317,155 + -0.5 317,156 - -0.5 317,158 + -0.3 317,158 + -0.2 317,158 + +0.4 317,159 - -0.4 317,159 - -0.3 317,177 + +0.2 317,227 - -1.8 317,291 + -0.5 317,292 - -0.6 317,292 - -0.1 317,707 + PS417_01430 0.13 -0.5
Or see this region's nucleotide sequence