Strain Fitness in Pseudomonas simiae WCS417 around PS417_01400
Experiment: Chloramphenicol 0.0075 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Chloramphenicol 0.0075 mg/ml |
---|---|---|---|---|---|
remove | |||||
308,884 | + | PS417_01395 | 0.75 | -0.5 | |
308,921 | + | PS417_01395 | 0.76 | +0.0 | |
308,921 | + | PS417_01395 | 0.76 | -0.7 | |
308,922 | - | PS417_01395 | 0.76 | +0.3 | |
308,923 | + | PS417_01395 | 0.76 | -1.3 | |
308,924 | - | PS417_01395 | 0.76 | -0.3 | |
309,356 | + | PS417_01395 | 0.88 | +0.1 | |
309,357 | - | PS417_01395 | 0.88 | -1.1 | |
309,392 | + | PS417_01395 | 0.89 | -0.1 | |
309,393 | - | +0.5 | |||
309,393 | - | PS417_01395 | 0.89 | -0.0 | |
309,393 | - | PS417_01395 | 0.89 | +0.1 | |
309,519 | - | +0.2 | |||
309,519 | - | +0.2 | |||
309,578 | + | +0.7 | |||
309,579 | - | +0.1 | |||
309,635 | + | +0.9 | |||
309,635 | + | -1.0 | |||
309,636 | - | +0.3 | |||
309,636 | - | -0.3 | |||
309,758 | + | -1.1 | |||
309,793 | - | +0.3 | |||
309,845 | + | -0.0 | |||
309,846 | - | +0.4 | |||
309,938 | - | PS417_01400 | 0.25 | -0.8 | |
310,148 | - | PS417_01400 | 0.66 | -0.6 | |
310,403 | - | +1.3 | |||
310,599 | + | PS417_01405 | 0.20 | +0.0 | |
310,602 | - | -0.8 | |||
310,714 | - | PS417_01405 | 0.28 | +0.2 |
Or see this region's nucleotide sequence