Experiment: Chloramphenicol 0.0075 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_12730 and PS417_12735 are separated by 158 nucleotides PS417_12735 and PS417_12740 are separated by 232 nucleotides PS417_12740 and PS417_12745 overlap by 4 nucleotides
PS417_12730: PS417_12730 - glycosyltransferase, at 2,775,776 to 2,777,065
_12730
PS417_12735: PS417_12735 - peroxidase, at 2,777,224 to 2,777,724
_12735
PS417_12740: PS417_12740 - secretion protein HlyD, at 2,777,957 to 2,779,258
_12740
PS417_12745: PS417_12745 - multidrug transporter, at 2,779,255 to 2,782,356
_12745
Position (kb)
2777
2778
2779
2780 Strain fitness (log2 ratio)
-1
0
1 at 2776.987 kb on + strand at 2777.151 kb on + strand at 2777.210 kb on + strand at 2777.211 kb on - strand at 2777.362 kb on - strand, within PS417_12735 at 2777.691 kb on + strand at 2777.695 kb on + strand at 2777.722 kb on + strand at 2777.722 kb on + strand at 2777.723 kb on - strand at 2777.755 kb on + strand at 2777.851 kb on + strand at 2777.852 kb on - strand at 2777.866 kb on - strand at 2777.876 kb on + strand at 2777.877 kb on - strand at 2777.880 kb on + strand at 2778.200 kb on + strand, within PS417_12740 at 2778.341 kb on + strand, within PS417_12740 at 2778.438 kb on - strand, within PS417_12740 at 2778.452 kb on - strand, within PS417_12740 at 2778.452 kb on - strand, within PS417_12740 at 2779.640 kb on - strand, within PS417_12745 at 2779.997 kb on - strand, within PS417_12745
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0075 mg/ml remove 2,776,987 + -0.2 2,777,151 + +0.2 2,777,210 + -0.1 2,777,211 - +0.1 2,777,362 - PS417_12735 0.28 +0.5 2,777,691 + +0.1 2,777,695 + +0.0 2,777,722 + +0.3 2,777,722 + +1.6 2,777,723 - +0.1 2,777,755 + -0.0 2,777,851 + -0.7 2,777,852 - -0.2 2,777,866 - +0.2 2,777,876 + -0.2 2,777,877 - +1.0 2,777,880 + -0.6 2,778,200 + PS417_12740 0.19 -0.1 2,778,341 + PS417_12740 0.29 -0.9 2,778,438 - PS417_12740 0.37 -0.8 2,778,452 - PS417_12740 0.38 -1.0 2,778,452 - PS417_12740 0.38 -0.5 2,779,640 - PS417_12745 0.12 -1.4 2,779,997 - PS417_12745 0.24 -0.9
Or see this region's nucleotide sequence