Experiment: Chloramphenicol 0.0075 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_11705 and PS417_11710 are separated by 200 nucleotides
PS417_11705: PS417_11705 - cyclic peptide transporter, at 2,543,313 to 2,544,965
_11705
PS417_11710: PS417_11710 - N(5)-hydroxyornithine transformylase PvdF, at 2,545,166 to 2,545,996
_11710
Position (kb)
2545
2546 Strain fitness (log2 ratio)
-1
0
1
2 at 2544.175 kb on + strand, within PS417_11705 at 2544.175 kb on + strand, within PS417_11705 at 2544.176 kb on - strand, within PS417_11705 at 2544.176 kb on - strand, within PS417_11705 at 2544.245 kb on + strand, within PS417_11705 at 2544.247 kb on + strand, within PS417_11705 at 2544.247 kb on + strand, within PS417_11705 at 2544.248 kb on - strand, within PS417_11705 at 2544.248 kb on - strand, within PS417_11705 at 2544.376 kb on + strand, within PS417_11705 at 2544.380 kb on - strand, within PS417_11705 at 2544.521 kb on - strand, within PS417_11705 at 2544.969 kb on + strand at 2544.970 kb on - strand at 2544.970 kb on - strand at 2544.970 kb on - strand at 2545.045 kb on - strand at 2545.049 kb on - strand at 2545.188 kb on - strand at 2545.188 kb on - strand at 2545.242 kb on - strand at 2545.343 kb on + strand, within PS417_11710 at 2545.343 kb on + strand, within PS417_11710 at 2545.343 kb on + strand, within PS417_11710 at 2545.344 kb on - strand, within PS417_11710 at 2545.344 kb on - strand, within PS417_11710 at 2545.721 kb on + strand, within PS417_11710 at 2545.722 kb on - strand, within PS417_11710 at 2545.832 kb on + strand, within PS417_11710 at 2545.833 kb on - strand, within PS417_11710 at 2545.833 kb on - strand, within PS417_11710 at 2545.995 kb on - strand at 2546.351 kb on - strand at 2546.355 kb on - strand at 2546.365 kb on - strand at 2546.369 kb on - strand at 2546.630 kb on - strand at 2546.633 kb on + strand at 2546.634 kb on - strand at 2546.634 kb on - strand at 2546.975 kb on + strand at 2546.996 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0075 mg/ml remove 2,544,175 + PS417_11705 0.52 -0.4 2,544,175 + PS417_11705 0.52 -1.1 2,544,176 - PS417_11705 0.52 +0.0 2,544,176 - PS417_11705 0.52 -1.7 2,544,245 + PS417_11705 0.56 -0.4 2,544,247 + PS417_11705 0.57 -0.5 2,544,247 + PS417_11705 0.57 +0.2 2,544,248 - PS417_11705 0.57 -0.8 2,544,248 - PS417_11705 0.57 -1.0 2,544,376 + PS417_11705 0.64 +0.7 2,544,380 - PS417_11705 0.65 -0.2 2,544,521 - PS417_11705 0.73 -0.6 2,544,969 + -0.3 2,544,970 - -0.4 2,544,970 - +0.5 2,544,970 - +0.0 2,545,045 - -0.4 2,545,049 - -0.5 2,545,188 - +0.5 2,545,188 - +0.6 2,545,242 - -1.0 2,545,343 + PS417_11710 0.21 +0.7 2,545,343 + PS417_11710 0.21 -1.1 2,545,343 + PS417_11710 0.21 +0.0 2,545,344 - PS417_11710 0.21 +2.1 2,545,344 - PS417_11710 0.21 +0.3 2,545,721 + PS417_11710 0.67 -0.5 2,545,722 - PS417_11710 0.67 -0.3 2,545,832 + PS417_11710 0.80 +0.0 2,545,833 - PS417_11710 0.80 +0.9 2,545,833 - PS417_11710 0.80 -0.9 2,545,995 - -0.8 2,546,351 - -1.0 2,546,355 - +0.1 2,546,365 - +1.6 2,546,369 - -0.7 2,546,630 - +1.3 2,546,633 + -1.3 2,546,634 - -0.1 2,546,634 - +1.0 2,546,975 + -0.0 2,546,996 - +0.0
Or see this region's nucleotide sequence