Strain Fitness in Pseudomonas simiae WCS417 around PS417_06865
Experiment: Chloramphenicol 0.0075 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Chloramphenicol 0.0075 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,518,094 | - | PS417_06860 | 0.33 | +0.2 | |
1,518,328 | + | PS417_06860 | 0.52 | +0.2 | |
1,518,718 | + | PS417_06860 | 0.84 | -0.1 | |
1,518,718 | + | PS417_06860 | 0.84 | +1.5 | |
1,518,851 | - | +1.1 | |||
1,518,899 | - | -0.1 | |||
1,518,925 | - | -0.3 | |||
1,519,018 | + | PS417_06865 | 0.11 | -2.1 | |
1,519,018 | + | PS417_06865 | 0.11 | +0.3 | |
1,519,132 | - | PS417_06865 | 0.23 | -0.9 | |
1,519,173 | + | PS417_06865 | 0.28 | -0.2 | |
1,519,444 | - | PS417_06865 | 0.58 | -0.8 | |
1,519,864 | + | -1.1 | |||
1,519,865 | - | -0.5 | |||
1,519,893 | - | -0.1 | |||
1,520,127 | - | +0.1 | |||
1,520,242 | + | -0.2 | |||
1,520,243 | - | +0.9 | |||
1,520,281 | + | +0.5 | |||
1,520,281 | + | -0.3 | |||
1,520,281 | + | +3.4 | |||
1,520,282 | - | -0.7 | |||
1,520,462 | - | PS417_06870 | 0.16 | +0.3 | |
1,520,489 | - | PS417_06870 | 0.17 | +1.4 | |
1,520,489 | - | PS417_06870 | 0.17 | -0.6 | |
1,520,489 | - | PS417_06870 | 0.17 | -0.3 | |
1,520,630 | + | -0.5 | |||
1,520,631 | - | PS417_06870 | 0.23 | +0.6 | |
1,520,809 | + | PS417_06870 | 0.30 | -0.0 | |
1,520,809 | + | PS417_06870 | 0.30 | +0.1 | |
1,520,809 | + | PS417_06870 | 0.30 | +0.2 |
Or see this region's nucleotide sequence